Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 30 Aligned Residues 337 % Identity 18% Template c3pexA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: s. cerevisiae dbp5 l327v bound to gle1 h337r and ip6 Resolution 4.00 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																				.																																															.	.	.
Query SS confidence																				.																																															.	.	.
Query Sequence		L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	K	.	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	.	.	.	A	H	G	K	Q	V	A	L	M	A	P	T
Query Conservation																				.																																															.	.	.
Alig confidence															.					.														.	.	.	.																														.	.	.
Template Conservation															.																			.	.	.	.
Template Sequence		L	G	L	A	P	E	L	L	K	G	I	Y	A	.	M	K	F	Q	K	P	S	K	I	Q	E	R	A	L	P	L	L	L	.	.	.	.	H	N	P	P	R	N	M	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	S	L	T	M	L	T	R	V	N	P	E	D	A	S	P	Q	A	I	C	L	A	P	S
Template Known Secondary structure		T	T												.	T	T			S													S	.	.	.	.		S	S										T	T	S	S															S	S	S		S								S	S
Template Predicted Secondary structure															.																			.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.						.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence		E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	Q	.	.	.	.	.	F	N	G	L	A	L	V	I	I	D	E	Q	H	R
Query Conservation																																																															.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.
Template Sequence		R	E	L	A	R	Q	T	L	E	V	V	Q	E	M	G	K	F	T	K	I	T	S	Q	L	I	V	P	D	S	F	.	.	.	.	.	.	.	.	E	K	N	K	Q	I	N	A	Q	V	I	V	G	T	P	G	T	V	L	D	L	M	R	R	K	L	M	Q	L	Q	K	I	K	I	F	V	L	D	E	A	D	N
Template Known Secondary structure																T	T	S	S								S	T	T	S	S	.	.	.	.	.	.	.	.		S	S						S															T	T	S	S			T	T							S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.									.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
				402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	F	G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C
Query Conservation		.	.
Alig confidence		.	.																																																							.	.	.
Template Conservation																																																										.	.	.
Template Sequence		M	L	D	Q	Q	G	L	G	D	Q	C	I	R	V	K	R	F	L	P	K	D	T	Q	L	V	L	F	S	A	T	F	A	D	A	V	R	Q	Y	A	K	K	I	V	P	N	A	N	T	L	E	L	Q	D	A	I	K	.	.	.	Q	L	Y	M	D	C	K	N	E	A	D	K	F	D	V	L	T	E	L	Y	G
Template Known Secondary structure					S	T	T											T	S		T	T	S							S														S	T	T												.	.	.							S	S	T	T										T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.												.	.
Template Conservation																		.	.	.	.	.	.	.	.												.	.
Template Sequence		V	M	T	I	G	S	S	I	I	F	V	A	T	K	K	T	.	.	.	.	.	.	.	.	A	N	V	L	Y	G	K	L	K	S	E	.	.	G	H	E	V	S	I	L	H	G	D	L	Q	T	Q	E	R	D	R	L	I	D	D	F	R	E	G	R	S	K	V	L	I	T	T	N	V	L	A	R	G	I	D	I
Template Known Secondary structure		S	S			S							S					.	.	.	.	.	.	.	.										T	T	.	.	T								S	S	S														T	T	S		S						S				S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.												.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.									.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		560	.	.	.	.	.	.	.	.	.	570	.	.	.						.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		P	N	A	S	L	M	I	I	E	N	P	E	R	L	.	.	.	.	.	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K	T	A	Q	I	R	L	Q	V	L
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.
Template Conservation
Template Sequence		P	T	V	S	M	V	V	N	Y	D	L	P	T	L	A	N	G	Q	A	D	P	A	T	Y	I	H	R	I	G	R	T	G	R	F	G	R	K	G	V	A	I	S	F	V	H	D	K	N	S	F	N	I	L	S	A	I	Q	K	Y
Template Known Secondary structure		S								S	S			B		T	T	S		B										T	T	S	S		T	T											S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions