Job Description P24230 Confidence 99.72% Date Thu Jan 5 11:41:25 GMT 2012 Rank 115 Aligned Residues 180 % Identity 14% Template c3llmB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase Resolution 2.80 Å

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		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.						.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence		N	D	T	L	K	N	K	L	L	A	A	L	P	F	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	.	.	.	.	.	A	H	G	K	Q	V	A	L	M	A	P	T	E	L
Query Conservation																																																															.	.	.	.	.
Alig confidence																															.	.	.	.	.	.																											.	.	.	.	.
Template Conservation																															.	.	.	.	.	.
Template Sequence		D	H	D	L	Q	A	I	L	Q	E	R	E	L	L	P	V	K	K	F	E	S	E	I	L	E	A	I	S	Q	.	.	.	.	.	.	N	S	V	V	I	I	R	G	A	T	G	C	G	K	T	T	Q	V	P	Q	F	I	L	D	D	F	I	Q	N	D	R	A	A	E	C	N	I	V	V	T	Q	P	R	R	I
Template Known Secondary structure														T	S	G	G	G	G	G											.	.	.	.	.	.		S								T	T	S	S																T	T		G	G	G								S	S
Template Predicted Secondary structure																															.	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.							.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	Q	.	.	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q
Query Conservation																																																													.	.
Alig confidence																														.	.	.	.	.	.	.	.																								.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		S	A	V	S	V	A	E	R	V	A	F	E	R	G	E	E	P	G	K	S	C	G	Y	S	V	R	F	E	.	.	.	.	.	.	.	.	S	I	L	P	R	P	H	A	S	I	X	F	C	T	V	G	V	L	L	R	K	L	E	A	G	I	R	G	I	S	H	V	I	V	D	E	I	H	E	R	D	I	N	T
Template Known Secondary structure													T	T	T			T	T	S	S						T	T		.	.	.	.	.	.	.	.						S	S	S																			T	T									T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.									.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		407			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		R	.	.	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		D	F	L	L	V	V	L	R	D	V	V	Q	A	Y	P	E	V	R	I	V	L	X	S	A	T	I	D	T	S	X	F	C	E	Y	F	F	N	C	P	I	I	E	V
Template Known Secondary structure																T	T	S							S	S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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