Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 24 Aligned Residues 337 % Identity 20% Template c3ewsA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: human dead-box rna-helicase ddx19 in complex with adp Resolution 2.70 Å

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		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																				.																																																.	.	.
Query SS confidence																				.																																																.	.	.
Query Sequence		P	L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	.	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	.	.	.	A	H	G	K	Q	V	A	L	M	A	P
Query Conservation																				.																																																.	.	.
Alig confidence																.				.															.	.	.	.																														.	.	.
Template Conservation																.																			.	.	.	.
Template Sequence		E	L	R	L	K	P	Q	L	L	Q	G	V	Y	A	.	M	G	F	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	L	.	.	.	.	A	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	V	L	A	M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P
Template Known Secondary structure		G	G													.	T	T			S			T	T									S	.	.	.	.		S	S										T	T	S	S															T	T	S		S								S
Template Predicted Secondary structure																.																			.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.							.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.
Query Sequence		T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	.	.	.	.	.	.	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q
Query Conservation																																																													.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		T	Y	E	L	A	L	Q	T	G	K	V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	L	.	.	.	.	.	.	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G	T	V	L	D	W	C	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A
Template Known Secondary structure		S															T	T	T		T	T							S	T	T				.	.	.	.	.	.		S		S					S														T	T	T			S		G	G	G		S
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		400	.	.	.	.	.			.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.				.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure								.	.																																																					.	.	.
Query SS confidence								.	.																																																					.	.	.
Query Sequence		H	R	F	G	V	H	.	.	Q	R	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	.	.	.	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R
Query Conservation								.	.																																																					.	.	.
Alig confidence								.	.																																																					.	.	.
Template Conservation
Template Sequence		D	V	M	I	A	T	Q	G	H	Q	D	Q	S	I	R	I	Q	R	M	L	P	R	N	C	Q	M	L	L	F	S	A	T	F	E	D	S	V	W	K	F	A	Q	K	V	V	P	D	P	N	V	I	K	L	K	R	E	E	E	T	L	D	T	I	K	Q	Y	Y	V	L	C	S	S	R	D	E	K	F	Q	A	L
Template Known Secondary structure					T	T	S												T	T	S		T	T	S							S														S	S	S													G	G	G									S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.												.	.
Template Conservation																							.	.	.	.	.	.	.	.												.	.
Template Sequence		C	N	L	Y	G	A	I	T	I	A	Q	A	M	I	F	C	H	T	R	K	T	.	.	.	.	.	.	.	.	A	S	W	L	A	A	E	L	S	K	E	.	.	G	H	Q	V	A	L	L	S	G	E	M	M	V	E	Q	R	A	A	V	I	E	R	F	R	E	G	K	E	K	V	L	V	T	T	N	V	C	A
Template Known Secondary structure								S				S						S	S				.	.	.	.	.	.	.	.											T	.	.	T								T	T	S														T	T	S		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.												.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.									.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.						.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		V	G	V	D	V	P	N	A	S	L	M	I	I	E	N	P	E	R	L	G	.	.	.	.	.	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K	T	A	Q	I	R	L	Q
Query Conservation																						.	.	.	.	.
Alig confidence																						.	.	.	.	.														.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		R	G	I	D	V	E	Q	V	S	V	V	I	N	F	D	L	P	V	D	K	D	G	N	P	D	N	E	T	Y	L	H	R	I	G	R	G	K	R	.	.	.	.	G	L	A	V	N	M	V	D	S	K	H	S	M	N	I	L	N	R	I	Q
Template Known Secondary structure		T	T					S							S	S			B		S	S	S	S	B										T					.	.	.	.									S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.					.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions