Job Description P24230 Confidence 99.89% Date Thu Jan 5 11:41:25 GMT 2012 Rank 64 Aligned Residues 189 % Identity 17% Template c3dkpA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx52; PDBTitle: human dead-box rna-helicase ddx52, conserved domain i in complex with2 adp Resolution 2.10 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																			.																																																.	.	.	.
Query SS confidence																			.																																																.	.	.	.
Query Sequence		L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	.	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	.	.	.	.	A	H	G	K	Q	V	A	L	M	A	P
Query Conservation																			.																																																.	.	.	.
Alig confidence															.				.															.	.	.	.	.	.																												.	.	.	.
Template Conservation															.																			.	.	.	.	.	.
Template Sequence		Y	K	I	N	S	R	L	L	Q	N	I	L	D	.	A	G	F	Q	M	P	T	P	I	Q	M	Q	A	I	P	V	M	L	.	.	.	.	.	.	H	G	R	E	L	L	A	S	A	P	T	G	S	G	K	T	L	A	F	S	I	P	I	L	M	Q	L	K	Q	P	A	N	K	G	F	R	A	L	I	I	S	P
Template Known Secondary structure															.	T	T			S														.	.	.	.	.	.	T	T									T	T	S																S			S	S	S								S
Template Predicted Secondary structure															.																			.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.								.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	.	.	.	.	.	.	.	Q	F	N	G	L	A	L	V	I	I	D	E
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence																															.	.	.																														.	.	.	.	.	.	.
Template Conservation																															.	.	.
Template Sequence		T	R	E	L	A	S	Q	I	H	R	E	L	I	K	I	S	E	G	T	G	F	R	I	H	M	I	H	K	A	.	.	.	A	V	A	A	K	K	F	G	P	K	S	S	K	K	F	D	I	L	V	T	T	P	N	R	L	I	Y	L	L	K	Q	D	P	P	G	I	D	L	A	S	V	E	W	L	V	V	D	E
Template Known Secondary structure		S															T	T	T	S											.	.	.					T	T	T	S	T	T	S																				S	S	S		S				T	T							S	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		399	400	.	.	.			.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.															.
Query SS confidence							.	.															.
Query Sequence		Q	H	R	F	G	.	.	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	.	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	D
Query Conservation							.	.															.
Alig confidence							.	.															.
Template Conservation
Template Sequence		S	D	K	L	F	E	D	G	G	F	R	D	Q	L	A	S	I	F	L	A	C	T	S	H	K	V	R	R	A	M	F	S	A	T	F	A	Y	D	V	E	Q	W	C	K	L	N	L	D	N	V	I	S	V	S
Template Known Secondary structure																									T	T								S	S													S	S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions