Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 12 Aligned Residues 346 % Identity 22% Template c2zj2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1 Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	.	A	H	G	K	Q	V	A	L	M	A	P	T	E	L	L
Query Conservation																																																																		.
Alig confidence																																			.	.	.	.	.																											.
Template Conservation																																			.	.	.	.	.
Template Sequence		L	R	V	D	E	R	I	K	S	T	L	K	E	R	G	I	E	S	F	Y	P	P	Q	A	E	A	L	K	S	G	I	L	E	.	.	.	.	.	G	K	N	A	L	I	S	I	P	T	A	S	G	K	T	L	I	A	E	I	A	M	V	H	R	I	L	T	Q	G	G	K	A	V	Y	I	V	P	L	K	A	L
Template Known Secondary structure		S		S											T	T			B										T	T	T	G	G	G	.	.	.	.	.	T							S		G	G	G	T																		S							S	S	T	T	S
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.
Query Sequence		A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	.	.	.	.	.	E	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V
Query Conservation																																																								.	.	.	.	.
Alig confidence																.																	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation																.																	.	.	.	.	.	.	.
Template Sequence		A	E	E	K	F	Q	E	F	Q	D	W	E	K	I	.	G	L	R	V	A	M	A	T	G	D	Y	D	S	K	D	E	.	.	.	.	.	.	.	W	L	G	K	Y	D	I	I	I	A	T	A	E	K	F	D	S	L	L	R	H	G	S	S	W	I	K	D	V	K	I	L	V	A	D	E	I	H	L	I	G	S
Template Known Secondary structure									T	G	G	G	G	G	G	.	T								S			S				G	.	.	.	.	.	.	.	G	G	G	G		S																T		G	G	G	G	G								T	G	G	G	G	G
Template Predicted Secondary structure																.																	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.					.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure															.													.																											.	.	.	.
Query SS confidence															.													.																											.	.	.	.
Query Sequence		H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	.	G	F	H	P	H	Q	L	I	M	T	A	T	.	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	D	E	L	P	P	G	R	.	.	.	.	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A
Query Conservation															.													.																											.	.	.	.
Alig confidence															.													.																											.	.	.	.
Template Conservation
Template Sequence		R	D	R	G	A	T	L	E	V	I	L	A	H	M	L	G	K	A	Q	I	I	G	L	S	A	T	I	G	N	P	E	E	L	A	E	W	L	N	A	E	L	I	V	S	D	W	R	P	V	K	L	R	R	G	V	F	Y	Q	G	F	V	T	W	E	D	G	S	I	D	R	F	S	S	W	E	E	L	V	Y	D
Template Known Secondary structure		T	T	T												B	T	T	B										S									T	T										S	S									T	T					T	T	S						S	S	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.																									.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																																																																	.
Template Sequence		A	I	R	K	K	K	G	A	L	I	F	V	N	M	R	R	K	A	E	R	V	A	L	E	L	S	K	K	V	K	S	L	L	T	K	P	E	I	R	A	L	N	E	L	A	D	S	L	E	E	N	P	T	N	E	K	L	A	K	A	I	R	G	.	G	V	A	F	H	H	A	G	L	G	R	D	E	R	V	L
Template Known Secondary structure					T	T								S	S																G	G	G																S			S												T	.	T						T	T	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570				.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.			590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.																				.	.
Query SS confidence																																						.	.	.																				.	.
Query Sequence		V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	P	N	A	S	L	M	I	I	E	N	P	.	.	.	E	R	L	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	.	.	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K	T	A	Q	I	R
Query Conservation																																						.	.	.																				.	.
Alig confidence																																						.	.	.																				.	.
Template Conservation
Template Sequence		V	E	E	N	F	R	K	G	I	I	K	A	V	V	A	T	P	T	L	S	T	P	A	F	R	V	I	I	R	D	I	W	R	Y	S	D	F	G	M	E	R	I	P	I	I	E	V	H	Q	M	L	G	R	A	G	R	P	K	Y	D	E	V	G	E	G	I	I	V	S	T	S	D	D	P	R	E	V	M	N	H
Template Known Secondary structure								T	T	S	S							S	T	T				B	S							S					T	T															T	T	B			T	T	T		S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		610
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		396

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions