Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 39 Aligned Residues 263 % Identity 22% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

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		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	.	R	A	I	A	H	G	K	Q	V	A	L	M	A	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E
Query Conservation																											.
Alig confidence																											.																												.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	R	Q	M	T	V	L	D	L	H	P	G	S	G	K	T	R	K	I	L	P	Q	I	I	K	D	A	I	Q	Q	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	.	.	.	.	.	.	G	L	P	V	R	Y	Q	T	G	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T	T									T	T	S		T	T	T	T												T	T									S											T	T	.	.	.	.	.	.	T	S								.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.				.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																								.	.	.																															.
Query SS confidence																								.	.	.																															.
Query Sequence		A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	Q	.	.	.	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	.	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A
Query Conservation																								.	.	.																															.
Alig confidence		.	.	.	.	.																		.	.	.																															.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	N	E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S	P	N	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	A	T	K	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P	P	G	T	T	D	P	F	P	D	S	N
Template Known Secondary structure		.	.	.	.	.			S															S							S					S	S	T	T			S																T	T	S								S	S		T	T				S	S				S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.												.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.												.	.
Template Sequence		A	P	I	H	D	L	Q	D	E	I	P	D	R	A	W	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	E	W	I	T	E	Y	A	G	K	T	V	W	F	V	A	S	V	K	M	.	.	.	.	.	.	.	.	G	N	E	I	A	M	C	L	Q	R	A	.	.	G	K	K	V	I
Template Known Secondary structure		S											S	S			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S							S					.	.	.	.	.	.	.	.											T	.	.	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.												.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.																	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.									.	370	.	.	.	.	.	.	.	.	.			380	.	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.																		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	A	S	L	M	I	I	E	N	P	E	R	L	G	L	A	Q	L	H	Q	L	R	G	R
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation															.	.	.	.																	.																																			.
Template Sequence		Q	L	N	R	K	S	Y	D	T	E	Y	P	K	.	.	.	.	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	A	.	N	F	G	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	E	E	G	E	G	R	V	I	L	G	N	P	S	P	I	.	T	S	A	S	A	A	Q	R	R	G	R
Template Known Secondary structure				S	T	T						G	G	G	.	.	.	.	S	S	S				S					S	S				.			S		S																S	S	S							S					.										T	T
Template Predicted Secondary structure															.	.	.	.																	.																																			.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.
		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	R	N	P	N	Q	V	G	D	E	Y	H	Y	G	G	A	T	S	E
Template Known Secondary structure		S	S			T	T										S
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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