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Job DescriptionP24230
Confidence100.00%DateThu Jan 5 11:41:25 GMT 2012
Rank40Aligned Residues269
% Identity21%Templatec2wv9A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   287..290.........300.........310. ........320.........330.........340.........350.........360.....
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Query Sequence  DVPMMRLVQGDVGSGKTLVAALAAL. RAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGKARLAQQE
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Template Sequence  KKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPVRYLTPREH. . . . . . . . . . . . . . .
Template Known Secondary structure  STT



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   185....190.........200.........210.........220.........230.........240.........
 
   366...370.........380...... ...390.........400.........410....... ..420.........430.........440
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Query Sequence  AIASGQVQMIVGTHAIFQEQV. . . . QFNGLALVIIDEQHRFGVHQRLALWEKGQQQ. GFHPHQLIMTATPIPRTLAMTAY
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Template Sequence  . . . SGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT
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   253......260.........270.........280.........290.........300.........310.........320.........
 
   441........450.........460.........470.........480.........490.........500.........510.........520
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Query Sequence  ADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHHACITEGRQAYWVCTLIEESELLEAQAAEATWEELKLALPELNV
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Template Sequence  NSPVHDVSSEIPDRAWSS. . . . . . . . . . . . . . . . GFEWITDYAGKTVWFVASVKM. . . . . . . . SNEIAQCLQRA. . GKRV
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   330.........340....... ..350.........360........ .370......... 380...
 
   521........530.........540.........550.........560.........570 .........580.
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Query Sequence  GLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENP. . . . . . . . . . . . . . . . . . . ERLGLAQLHQL
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Template Sequence  IQLNRKSYDTEYPK. . . . CKNGDWDFVITTDISEMGANFG. ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQR
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   384.....390....... ..400.........410......... 420.........430.........440.........450........
 
   582.......590.........600....
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Query Sequence  RGRVGRGAVASHCVLLYKTPLSK
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Template Sequence  RGRVGRNPSQIGDEYHYGGGTSE
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   459460.........470.........480.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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