Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 43 Aligned Residues 326 % Identity 19% Template c2vsxA_ PDB info PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex Resolution 2.8 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																			.																																																	.	.	.
Query SS confidence																			.																																																	.	.	.
Query Sequence		L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	.	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	A	.	.	.	H	G	K	Q	V	A	L	M	A	P	T
Query Conservation																			.																																																	.	.	.
Alig confidence															.				.															.	.	.	.	.	.																													.	.	.
Template Conservation															.																			.	.	.	.	.	.
Template Sequence		M	E	L	D	E	N	L	L	R	G	V	F	G	.	Y	G	F	E	E	P	S	A	I	Q	Q	R	A	I	M	P	I	I	.	.	.	.	.	.	E	G	H	D	V	L	A	Q	A	Q	S	G	T	G	K	T	G	T	F	S	I	A	A	L	Q	R	I	D	T	S	V	K	A	P	Q	A	L	M	L	A	P	T
Template Known Secondary structure		G	T											T	.	T	T			S														.	.	.	.	.	.	T	T									T	T	S	S															T	T			S								S	S
Template Predicted Secondary structure															.																			.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.							.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.						.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence		E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	Q	.	.	.	.	.	F	N	G	L	A	L	V	I	I	D	E	Q	H	R
Query Conservation																																																															.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	L	A	L	Q	I	Q	K	V	V	M	A	L	A	F	H	M	D	I	K	V	H	A	C	I	G	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	Q	I	V	V	G	T	P	G	R	V	F	D	N	I	Q	R	R	R	F	R	T	D	K	I	K	M	F	I	L	D	E	A	D	E
Template Known Secondary structure																T	S	S	S											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S															T	T		S			T	T								S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
			402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.				.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																									.	.	.
Query SS confidence		.																																																									.	.	.
Query Sequence		.	F	G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	.	.	.	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H
Query Conservation		.																																																									.	.	.
Alig confidence		.																																																									.	.	.
Template Conservation
Template Sequence		M	L	S	S	G	F	K	E	Q	I	Y	Q	I	F	T	L	L	P	P	T	T	Q	V	V	L	L	S	A	T	M	P	N	D	V	L	E	V	T	T	K	F	M	R	N	P	V	R	I	L	V	K	K	D	E	L	T	L	E	G	I	K	Q	F	Y	V	N	V	E	E	E	E	Y	K	Y	E	C	L	T	D	L
Template Known Secondary structure					T	T												S		T	T								S															S	S													S	T	T										S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	S	I	S	V	T	Q	A	V	I	F	C	N	T	R	R	K	V	E	E	L	T	T	K	L	R	N	D	.	.	.	.	.	.	.	.	.	.	K	F	T	V	S	A	I	Y	S	D	L	P	Q	Q	E	R	D	T	I	M	K	E	F	R	S	G	S	S	R	I	L	I	S	T	D	L	L	A	R	G	I
Template Known Secondary structure					S			S							S	S														T	.	.	.	.	.	.	.	.	.	.	T								T	T	S													T	T	T	S		S						S	G	G	G	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.											.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	P	N	A	S	L	M	I	I	E	N	P	E	R	L	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K	T	A	Q	I	R	L	Q	V	L	R	D
Query Conservation
Alig confidence																	.															.	.	.	.	.	.
Template Conservation																	.															.	.	.	.	.	.
Template Sequence		D	V	Q	Q	V	S	L	V	I	N	Y	D	L	P	A	.	N	K	E	N	Y	I	H	R	I	G	R	K	G	V	.	.	.	.	.	.	A	I	N	F	V	T	N	E	D	V	G	A	M	R	E	L	E	K	F	Y	S	T
Template Known Secondary structure					S							S	S			S	.	S	G	G	G	G										.	.	.	.	.	.							S	S	S											T	T
Template Predicted Secondary structure																	.															.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.							.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions