Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 37 Aligned Residues 260 % Identity 19% Template c2v6jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna helicase; PDBTitle: kokobera virus helicase: mutant met47thr Resolution 2.30 Å

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		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	.	R	A	I	A	H	G	K	Q	V	A	L	M	A	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I
Query Conservation																									.
Alig confidence																									.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	L	T	V	L	D	L	H	P	G	A	G	K	T	R	R	V	L	P	Q	L	V	R	E	A	V	K	K	R	L	R	T	V	I	L	A	P	T	R	V	V	A	S	E	T	Y	E	A	L	R	G	E	P	I	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	S		T	T	T	T												T	T								S	S											T	T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure																	.	.	.	.																																						.
Query SS confidence																	.	.	.	.																																						.
Query Sequence		A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	.	.	.	.	Q	E	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	G	F	.	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D
Query Conservation																	.	.	.	.																																						.
Alig confidence		.															.	.	.	.																																						.														.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		.	M	G	N	E	I	V	D	F	M	C	H	S	T	F	T	M	K	L	L	Q	G	V	R	V	P	N	Y	N	L	Y	I	M	D	E	A	H	F	L	D	P	A	S	V	A	A	R	G	Y	I	E	T	R	V	S	M	G	D	A	G	A	I	F	M	T	A	T	P	P	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.					S																T							S						T	T	T			S																	T	S								S	S		T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
			59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L
Query Conservation
Alig confidence		.	.	.	.																								.	.																									.	.	.	.	.	.	.	.												.	.
Template Conservation		.	.	.	.																								.	.																									.	.	.	.	.	.	.	.												.	.
Template Sequence		.	.	.	.	T	T	E	A	F	P	P	S	N	S	P	I	I	D	E	E	T	R	I	P	D	K	A	.	.	W	N	S	G	Y	E	W	I	T	E	F	D	G	R	T	V	W	F	V	H	S	I	K	Q	.	.	.	.	.	.	.	.	G	A	E	I	G	T	C	L	Q	K	A	.	.	G	K	K	V	L	Y
Template Known Secondary structure		.	.	.	.				S	S				S	S											S	S		.	.		S	S							S		S	S							S	S				.	.	.	.	.	.	.	.											T	.	.	T
Template Predicted Secondary structure		.	.	.	.																								.	.																									.	.	.	.	.	.	.	.												.	.
Template SS confidence
						137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560																	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	S	L	M	I	I	E	N	P	E	R	L	G	L	A	Q	L	H	Q	L	R	G	R	V	G
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation							.	.	.	.																																																										.
Template Sequence		L	N	R	K	T	.	.	.	.	F	E	S	E	Y	P	K	C	K	S	E	K	W	D	F	V	I	T	T	D	I	S	E	M	G	A	N	F	K	A	D	R	V	I	D	P	R	K	T	I	K	P	I	L	L	D	G	R	V	S	M	Q	G	P	I	A	I	.	T	P	A	S	A	A	Q	R	R	G	R	I	G
Template Known Secondary structure				T	T	T	.	.	.	.					S	T					S			S						G	G	G	T	T	S						S															S	S	S										.										T	T	S	S
Template Predicted Secondary structure							.	.	.	.																																																										.
Template SS confidence
		201	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	N	P	E	K	L	G	D	I	Y	A	Y	S	G	N	V	S
Template Known Secondary structure				T	T										S
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions