Job Description P24230 Confidence 97.03% Date Thu Jan 5 11:41:25 GMT 2012 Rank 196 Aligned Residues 135 % Identity 19% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		273	.	.	.	.	.	.	280	.	.	.	.	.														.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Query Sequence		Q	A	R	V	V	A	E	I	E	R	D	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	A	H	G	K	Q	V	A	L	M	A	.	.	P	T	E	L	L	A	E	Q	H	A	N	N	F
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template Conservation
Template Sequence		K	E	H	I	I	K	I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L
Template Known Secondary structure																				S								S	S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	.	.	L	A	L	W	E	K	G	Q
Query Conservation																																																																								.	.
Alig confidence						.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.																						.	.
Template Conservation						.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Sequence		A	E	K	I	.	.	.	H	V	P	I	Y	G	D	E	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	K	S	P	V	D	I	V	K	E	G	M	E	.	.	.	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E
Template Known Secondary structure					S	.	.	.	S							S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	T	T							.	.	.	T	T	S	S		S									S		S	S											T	T	S
Template Predicted Secondary structure						.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template SS confidence
		151	.	.	.				.	.	.	.	.	160	.	.	.	.																	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	N	P	D	E	I	I	L	V	I	D	G	T
Template Known Secondary structure		S	S			S								G	G
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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