Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 28 Aligned Residues 271 % Identity 19% Template c2jlrA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:serine protease subunit ns3; PDBTitle: dengue virus 4 ns3 helicase in complex with amppnp Resolution 2.0 Å

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		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	.	R	A	I	A	H	G	K	Q	V	A	L	M	A	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A
Query Conservation																										.
Alig confidence																										.																																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	R	L	T	I	M	D	L	H	P	G	A	G	K	T	K	R	I	L	P	S	I	V	R	E	A	L	K	R	R	L	R	T	L	I	L	A	P	T	R	V	V	A	A	E	M	E	E	A	L	R	G	L	P	I	R	Y	Q	T	P	A	V	K	S	D	H	T	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T									T	T	S	S	T	T	T	T												T	T								S	S											T	T	T	S							T	T	S	S					S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.					.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																						.	.	.	.																																.
Query SS confidence																						.	.	.	.																																.
Query Sequence		I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	.	.	.	.	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	.	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A
Query Conservation																						.	.	.	.																																.
Alig confidence		.	.	.	.																	.	.	.	.																																.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	R	E	I	V	D	L	M	C	H	A	T	F	T	T	R	L	L	S	S	T	R	V	P	N	Y	N	L	I	V	M	D	E	A	H	F	T	D	P	C	S	V	A	A	R	G	Y	I	S	T	R	V	E	M	G	E	A	A	A	I	F	M	T	A	T	P	P	G	S	T	D	P	F	P	Q	S	N
Template Known Secondary structure		.	.	.	.	S	S																		S						S						S	T	T			S																T	T	S								S	S		T	T				S	S				S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.												.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.												.	.
Template Sequence		S	P	I	E	D	I	E	R	E	I	P	E	R	S	W	N	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	W	I	T	D	Y	Q	G	K	T	V	W	F	V	P	S	I	K	A	.	.	.	.	.	.	.	.	G	N	D	I	A	N	C	L	R	K	S	.	.	G	K	R	V	I
Template Known Secondary structure		S											S	S			S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S							S	S				.	.	.	.	.	.	.	.											T	.	.	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.												.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.																	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.									.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.																				.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	P	N	A	S	L	M	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	N	P	E	R	L	G	L	A	Q	L	H	Q	L	R
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.																														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.																														.
Template Sequence		Q	L	S	R	K	T	.	.	.	.	F	D	T	E	Y	P	K	T	K	L	T	D	W	D	F	V	V	T	T	D	I	S	E	M	G	A	N	F	R	.	A	G	R	V	I	D	P	R	R	C	L	K	P	V	I	L	T	D	G	P	E	R	V	I	L	A	G	P	I	P	V	T	P	A	S	A	A	Q	R	R
Template Known Secondary structure					T	T	T	.	.	.	.					G	G	G	G	G	S	S			S						G	G	G	G	T	T					.		S																S	S	S
Template Predicted Secondary structure								.	.	.	.																														.
Template SS confidence
		384	.	.	.	.	.					390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	I	G	R	N	P	A	Q	E	D	D	Q	Y	V	F	S	G	D	P	L	R
Template Known Secondary structure		T	T	S	S			T	T										S
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions