Job Description P24230 Confidence 98.17% Date Thu Jan 5 11:41:25 GMT 2012 Rank 155 Aligned Residues 170 % Identity 14% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.												.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																							.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	K	P	.	.	.	.	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	.	.	.	.	.	.	.	.	.	.	.	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A
Query Conservation																							.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	I	K	L	V	K	Q	L	R	E	N	V	K	S	A	I	D	L	E	E	M	A	S	G	L	N	K	R	K	M	I	Q	H	A	V	F	K	E	L	V	K	L	V	D	P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y
Template Known Secondary structure		T	S	S	S	T	T												T	T					S	S	S																													S	S								S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		314	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		I	A	H	G	K	Q	V	A	L	M	A	.	.	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	Q	F	N	G	L
Query Conservation													.	.
Alig confidence													.	.																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	.	.	.	R	I	P	F	Y	G	S	Y	T	E	M	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F
Template Known Secondary structure				T	T											S	S	S														.	.	.	T										S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																																.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.																			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	.	.	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A	C	E	A	Q	A	K
Template Known Secondary structure													T	T																		S								T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions