Job Description P24230 Confidence 97.02% Date Thu Jan 5 11:41:25 GMT 2012 Rank 199 Aligned Residues 135 % Identity 17% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																					.																							.	.
Query SS confidence																					.																							.	.
Query Sequence		M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	.	T	L	V	A	A	L	A	A	L	R	A	I	A	H	G	K	Q	V	A	L	M	A	.	.	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R
Query Conservation																					.																							.	.
Alig confidence																					.																							.	.																		.	.	.														.	.	.
Template Conservation																																																															.	.	.														.	.	.
Template Sequence		L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	.	.	.	G	V	D	F	F	P	S	D	V	G	Q	K	P	.	.	.
Template Known Secondary structure		S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	.	.	.	T							S	S				T	.	.	.
Template Predicted Secondary structure																																																															.	.	.														.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	.	.	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T
Query Conservation																																																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T													T	T		S											S	S																		S								T	T	T	G	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		439
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		234

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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