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Job DescriptionP24230
Confidence99.82%DateThu Jan 5 11:41:25 GMT 2012
Rank91Aligned Residues328
% Identity22%Templatec2ipcB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   257..260.........270.........280.........290.........300.........310.........320.........330......
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Query Sequence  LKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANN
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Template Sequence  TRESAKRYLGMRHFDVQLIGGAVLHE. . . . . . . . GKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEW
Template Known Secondary structure  T




T........TS

STTT
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   68.70.........80.........90... ......100.........110.........120.........130.........
 
   337..340.........350.........360.........370.........380... ...... 390.........400.
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Query Sequence  FRNWFAPLGIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQ. . . . . . . . . . . . . EQVQFN. . GLALVIIDEQHR
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Template Sequence  MGPVYRGLGLSVGVIQHASTPAERRKAY. . . . . . LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS
Template Known Secondary structure  TTT



TT

......TSSTT
SSTTT

S
SSSSS
TT
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   140.........150.........160....... ..170.........180.........190.........200.........210...
 
   402 .......410.......
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Query Sequence  F. . . . . . . . . . . . . . . . . GVHQRLALWEKGQQQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLF
Template Known Secondary structure  TTSSTTS
S
SS
S






SSS


SS




TTS






S
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   214.....220.........230.........240.........250.........260.........270.........280.........290...
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQN
Template Known Secondary structure  TTT
S

SS
TTTT
TT


GGGTT




S

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   294.....300.........310.........320.........330.........340.........350.........360.........370...
 
   418.420.........430.........440.........450......... 460.........470.........480.........490...
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Query Sequence  . . GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVT. . TVAIPDTRRTDIIDRVHHACITEGRQAYWVCTLI
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Template Sequence  FFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISI
Template Known Secondary structure  TTSSSS
GGG





SS



SST


SS
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   374.....380.........390.........400.........410.........420.........430.........440.........450...
 
   494.....500... ....
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Query Sequence  EESELLEAQA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AEAT
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Template Sequence  EKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRA
Template Known Secondary structure  SSTTSTT

STSSSTT
SSGGGGG

SS
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   454.....460.........470.........480.........490.........500.........510.........520.........530...
 
   508.510.........520.........530.........540.........550.........560
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Query Sequence  WEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVP. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSKT. . VTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVEL
Template Known Secondary structure  T





SSSTTTSTT
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SSTTTT



SS

TTTTSSS
STTT
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   534.....540.........550.........560......... 570.........580.........590.........600.........610.
 
   561........570.........580.........590..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NASLMIIENPERLGLAQLHQLRGRVGRGAVAS
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Template Sequence  FIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHE. . SRRIDNQLRGRAGRQGDPG
Template Known Secondary structure  T
TT

TTT



SS

S..STSS
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   612.......620.........630.........640.........650.........660.........670 .........680.........
 
   593......600..
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Query Sequence  HCVLLYKTPL
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Template Sequence  GSRFYVSFDD
Template Known Secondary structure  SSS
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   690.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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