Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 41 Aligned Residues 342 % Identity 16% Template c2i4iA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx3x; PDBTitle: crystal structure of human dead-box rna helicase ddx3x Resolution 2.20 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																			.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	.	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.				.															.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																			.	.	.	.	.	.
Template Sequence		V	E	M	G	E	I	I	M	G	N	I	E	L	.	T	R	Y	T	R	P	T	P	V	Q	K	H	A	I	P	I	I	K	.	.	.	.	.	.	E	K	R	D	L	M	A	C	A	Q	T	G	S	G	K	T	A	A	F	L	L	P	I	L	S	Q	I	Y	S	D	G	P	G	E	A	L	R	A	M	K	E	N
Template Known Secondary structure		S													.		T			S														.	.	.	.	.	.	T	T									T	T	S
Template Predicted Secondary structure															.																			.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
								315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																																									.	.
Query SS confidence		.	.	.	.	.	.																																																																									.	.
Query Sequence		.	.	.	.	.	.	A	H	G	K	Q	V	A	L	M	A	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	.	.
Query Conservation		.	.	.	.	.	.																																																																									.	.
Alig confidence		.	.	.	.	.	.																																																					.	.	.	.																	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		G	R	Y	G	R	R	K	Q	Y	P	I	S	L	V	L	A	P	T	R	E	L	A	V	Q	I	Y	E	E	A	R	K	F	S	Y	R	S	R	V	R	P	C	V	V	Y	G	G	A	D	I	G	Q	Q	I	R	D	L	E	R	.	.	.	.	G	C	H	L	L	V	A	T	P	G	R	L	V	D	M	M	E	R
Template Known Secondary structure		B	T	T	B	S		S	B			S						S	S																T	T	S	S								S	S	S										T	T	.	.	.	.			S															T
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
					387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.						.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																.	.	.	.	.
Query SS confidence		.	.	.																																.	.	.	.	.
Query Sequence		.	.	.	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	.	.	.	.	.	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	V
Query Conservation		.	.	.																																.	.	.	.	.
Alig confidence		.	.	.																																.	.	.	.	.
Template Conservation
Template Sequence		G	K	I	G	L	D	F	C	K	Y	L	V	L	D	E	A	D	R	M	L	D	M	G	F	E	P	Q	I	R	R	I	V	E	Q	D	T	M	P	P	K	G	V	R	H	T	M	M	F	S	A	T	F	P	K	E	I	Q	M	L	A	R	D	F	L	D	E	Y	I	F	L	A	V	G	T	S	E	N	I	T	Q
Template Known Secondary structure		T	S	B			T	T							S	S							T	T										T	S	S	S				B	T	T	B							S															S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S
Query Conservation
Alig confidence																						.																												.	.	.	.	.	.	.	.	.	.
Template Conservation																						.																												.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	V	W	V	E	E	S	D	K	R	S	F	L	L	D	L	L	N	A	.	T	G	K	D	S	L	T	L	V	F	V	E	T	K	K	G	A	D	S	L	E	D	F	L	Y	H	E	.	.	.	.	.	.	.	.	.	.	G	Y	A	C	T	S	I	H	G	D	R	S	Q	R	D	R	E	E	A	L	H	Q
Template Known Secondary structure								G	G	G											T	.			T	T								S	S														T	.	.	.	.	.	.	.	.	.	.	T								T	T	S
Template Predicted Secondary structure																						.																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.											.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	P	N	A	S	L	M	I	I	E	N	P	E	R	L	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K	T	A	Q	I	R	L	Q	V	L	R	D	S	N
Query Conservation
Alig confidence																																				.															.	.
Template Conservation																																				.															.	.
Template Sequence		F	R	S	G	K	S	P	I	L	V	A	T	A	V	A	A	R	G	L	D	I	S	N	V	K	H	V	I	N	F	D	L	P	S	.	D	I	E	E	Y	V	H	R	I	G	R	T	G	R	.	.	N	L	G	L	A	T	S	F	F	N	E	R	N	I	N	I	T	K	D	L	L	D	L	L	V	E	A	K
Template Known Secondary structure					T	S	S											T	T	S											S	S			S	.	S									T	T	B			.	.											G	G	G	G	G	G											T	T
Template Predicted Secondary structure																																				.															.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520		.	.	.	.	.	.	.	.	.	530	.	.	.	.			.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions