Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 23 Aligned Residues 362 % Identity 19% Template c2fsgA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli Resolution 2.20 Å

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		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	Q	H	P	A	Q	R	R	L	I	L	E	E	L	L	A	H	N	L	S	M	L	A	L	R	A	G	A	Q	R	F	H	A	Q	P	L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.
Template Sequence		N	A	X	E	P	E	X	E	K	L	S	D	E	E	L	K	G	K	T	A	E	F	R	A	R	L	E	K	G	E	V	L	E	N	L	I	P	E	A	F	A	V	V	R	E	A	S	K	R	V	F	G	X	R	H	F	D	V	Q	L	L	G	G	X	V	L	N	E	.	.	.	.	.	.	.	.	R	C	I	A
Template Known Secondary structure				T							S																		T	T			G	G	G	G																	S														T	T	S	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.									.	.	.	100
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	A	H	G	K	Q	V	A	L	M	A	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.
Template Sequence		E	X	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A	E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	G	X	P	A	P	A	K	R	E	A	Y	.	.	.	.	.	.	A	A	D	I
Template Known Secondary structure					T	T	S						T									T	T	S	S							S	S																		T	T								T	T											.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																																								.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170							.	.	.	.
		375	.	.	.	.	380	.	.	.													.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.													.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	G	T	H	A	I	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	L	A	L	W	E	.	.	.	.	.	.	.	.	.	.	.	.	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	X	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	P	N	Q	T	L	A	S	I	T	F	Q	N	Y	F	R	L	Y	E	K	L	A	G	X	T	G	T	A
Template Known Secondary structure																	T	T		S	S	G	G	G												S						T	T	T	T	T	T																						T	T	S	S								S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.			.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	.	.	D	E	L	P	P	G	R	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W
Query Conservation																				.	.
Alig confidence																				.	.																																																.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.
Template Sequence		D	T	E	A	F	E	F	S	S	I	Y	K	L	D	T	V	V	V	P	T	N	R	P	X	I	R	K	D	L	P	D	L	V	Y	X	T	E	A	E	K	I	Q	A	I	I	E	D	I	K	E	R	T	A	K	G	Q	P	V	L	V	G	T	I	S	I	E	K	.	.	.	.	.	.	.	.	S	E	L	V	S
Template Known Secondary structure																						S	S													S	S																		T	T								S	S				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.									.	.	.	.	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	P	N	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																											.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																											.	.
Template Sequence		N	E	L	T	K	A	.	.	G	I	K	H	N	V	L	N	A	K	F	H	A	N	E	A	A	I	V	A	Q	A	G	Y	P	A	.	.	A	V	T	I	A	T	N	X	A	G	R	G	T	D	I	V	L	G	G	S	W	Q	A	E	V	A	A	L	E	N	P	T	A	E	Q	I	E	K	I	K	A	D	W	Q
Template Known Secondary structure							T	.	.	T								T	T											T	T	T	S	T	T	.	.							S			T	T						T	T			S					T	T		S	S			T
Template Predicted Secondary structure								.	.																											.	.
Template SS confidence
		467	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
														564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	M	I	I	E	N	P	E	R	L	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																							.
Template Sequence		V	R	H	D	A	V	L	E	A	G	G	L	H	I	I	G	T	E	R	H	E	.	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S	R	F	Y	L	S	X	E	D	A
Template Known Secondary structure										T	T	S						S	S			S	.	S									T	T	S	S	G	G	G											T	T	S	G
Template Predicted Secondary structure																							.
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.		.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.