Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 29 Aligned Residues 342 % Identity 17% Template c1xtkA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:probable atp-dependent rna helicase p47; PDBTitle: structure of decd to dead mutation of human uap56 Resolution 2.40 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																				.																																																	.	.	.
Query SS confidence																				.																																																	.	.	.
Query Sequence		L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	K	.	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	A	H	.	.	.	G	K	Q	V	A	L	M	A	P	T
Query Conservation																				.																																																	.	.	.
Alig confidence															.					.														.	.	.	.	.	.																														.	.	.
Template Conservation															.																			.	.	.	.	.	.
Template Sequence		F	L	L	K	P	E	L	L	R	A	I	V	D	.	C	G	F	E	H	P	S	E	V	Q	H	E	C	I	P	Q	A	I	.	.	.	.	.	.	L	G	M	D	V	L	C	Q	A	K	S	G	M	G	K	T	A	V	F	V	L	A	T	L	Q	Q	L	E	P	V	T	G	Q	V	S	V	L	V	M	C	H	T
Template Known Secondary structure		G													.	T	T																	.	.	.	.	.	.	T	T									S	S	T	T																	T	T									S
Template Predicted Secondary structure															.																			.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80							.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.						.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																				.																																											.	.	.	.	.
Query SS confidence																				.																																											.	.	.	.	.
Query Sequence		E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	.	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	.	.	.	.	.	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H
Query Conservation																				.																																											.	.	.	.	.
Alig confidence																				.																							.	.	.																		.	.	.	.	.
Template Conservation																																											.	.	.
Template Sequence		R	E	L	A	F	Q	I	S	K	E	Y	E	R	F	S	K	Y	M	P	N	V	K	V	A	V	F	F	G	G	L	S	I	K	K	D	E	E	V	L	K	K	.	.	.	N	C	P	H	I	V	V	G	T	P	G	R	I	L	A	L	A	R	N	K	S	L	N	L	K	H	I	K	H	F	I	L	D	E	A	D
Template Known Secondary structure																T	T	T		T	T								T	T	S												.	.	.	S			S															T	T	S	S			T	T								S
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		401			.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.				.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure			.	.																																																.	.	.
Query SS confidence			.	.																																																.	.	.
Query Sequence		R	.	.	F	G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	.	.	.	D	E	L	P	P	G	R	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V
Query Conservation			.	.																																																.	.	.
Alig confidence			.	.																																																.	.	.
Template Conservation
Template Sequence		K	M	L	E	Q	L	D	M	R	R	D	V	Q	E	I	F	R	M	T	P	H	E	K	Q	V	M	M	F	S	A	T	L	S	K	E	I	R	P	V	C	R	K	F	M	Q	D	P	M	E	I	F	V	D	D	E	T	K	L	T	L	H	G	L	Q	Q	Y	Y	V	K	L	K	D	N	E	K	N	R	K	L	F
Template Known Secondary structure					S	S													T	S		S	S	S							S	S			T	T										S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.												.	.
Template Conservation																						.	.	.	.	.	.	.	.												.	.
Template Sequence		D	L	L	D	V	L	E	F	N	Q	V	V	I	F	V	K	S	V	Q	R	.	.	.	.	.	.	.	.	C	I	A	L	A	Q	L	L	V	E	Q	.	.	N	F	P	A	I	A	I	H	R	G	M	P	Q	E	E	R	L	S	R	Y	Q	Q	F	K	D	F	Q	R	R	I	L	V	A	T	N	L	F	G	R
Template Known Secondary structure							S			S							S	S				.	.	.	.	.	.	.	.											T	.	.	T								S	S	S												T	T			S	S						S				T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.												.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.									300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	D	V	P	N	A	S	L	M	I	I	E	N	P	E	R	L	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K	T	A	Q	I	R	L	Q	V	L
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		G	M	D	I	E	R	V	N	I	A	F	N	Y	D	M	P	E	.	D	S	D	T	Y	L	H	R	V	A	R	A	G	R	F	G	T	K	G	L	A	I	T	F	V	S	D	E	N	D	A	K	I	L	N	D	V	Q	D	R
Template Known Secondary structure			B			T	T							S	S			S	.	S	T	T						S		B		S	S	S												S	T	T
Template Predicted Secondary structure																			.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions