Job Description P24230 Confidence 97.78% Date Thu Jan 5 11:41:25 GMT 2012
Rank 168 Aligned Residues 133
% Identity 16% Template c1sxjD_
PDB info
PDB header: replicationChain: D: PDB Molecule: activator 1 41 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)
Resolution 2.85 Å
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
   
272 . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 .
Predicted Secondary structure  
Query SS confidence  
Query Sequence  
A Q A R V V A E I E R D M A L D V P M M R L V Q G D V G S G K T L V A A L A A L R A I A H G K Q V A L M A P T E L L A E Q H A N N F R N W F A P L G I E V G W L
Query Conservation  
                                                                                   
Alig confidence  
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Template Conservation  
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Template Sequence  
A Q D H A V T V L K K T L K S A N L P H M L F Y G P P G T G K T S T I L A L T K E L .
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Y G P D L M K S R I L E L N A
Template Known Secondary structure  
S T T T T T T S T T S S . . . . . . . . . . . . . . . . . . . . . . . T T S S
Template Predicted Secondary structure  
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Template SS confidence  
   
41 . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70 . . . . . . . . . 80 . .
. . . . . . . 90 . . . . . . .
 
   
352 . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420 . . . . . . . . . 430
Predicted Secondary structure  
Query SS confidence  
Query Sequence  
A G K Q K G K A R L A Q Q E A I A S G Q V Q M I V G T H A I F Q E Q V Q F N G L A L V I I D E Q H R F G V H Q R L A L W E K G Q Q Q G F H P H Q L I M T A T P
Query Conservation  
                                                                                                       
Alig confidence  
. . .
Template Conservation  
                                                  . . .                                                                                    
Template Sequence  
S D E R G I S I V R E K V K N F A R L T V S K P S .
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K H D L E N Y P C P P Y K I I I L D E A D S M T A D A Q S A L R R T M E T Y S G V T R F C L I C N Y V
Template Known Secondary structure  
S S T T S . . . T T S S T T G G G S T T T T S G
Template Predicted Secondary structure  
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Template SS confidence  
   
98 . 100 . . . . . . . . . 110 . . . . . . . . . 120 . .
. . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . .
 
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf ] [Import into BibTeX ]