Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 1 Aligned Residues 616 % Identity 39% Template c1gm5A_ PDB info PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction Resolution 3.24 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		A	V	P	L	S	S	L	T	G	V	G	A	A	L	S	N	K	L	A	K	I	N	L	H	T	V	Q	D	L	L	L	H	L	P	L	R	Y	E	D	R	T	H	L	Y	P	I	G	E	L	L	P	G	V	Y	A	T	V	E	G	E	V	L	N	C	.	N	I	S	F	G	G	R	R	M	M	T	C	Q	I	S
Query Conservation																																																																		.
Alig confidence																																																																		.
Template Conservation
Template Sequence		S	T	D	I	Q	Y	A	K	G	V	G	P	N	R	K	K	K	L	K	K	L	G	I	E	T	L	R	D	L	L	E	F	F	P	R	D	Y	E	D	R	R	K	I	F	K	L	N	D	L	L	P	G	E	K	V	T	T	Q	G	K	I	V	S	V	E	T	K	K	F	Q	N	M	N	I	L	T	A	V	L	S
Template Known Secondary structure					S	S	S	S	S	S											T	T	T			S	S	G	G	G	T	S				S						S					S	S				S	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		D	G	S	G	I	L	T	M	R	F	F	N	F	S	A	A	M	K	N	S	L	A	.	.	A	G	R	R	V	L	A	Y	G	E	A	K	R	G	K	Y	G	A	E	M	I	H	P	E	Y	R	V	Q	G	D	L	S	T	P	E	L	Q	E	T	L	T	P	V	Y	P	T	T	E	G	V	K	Q	A	T	L	R
Query Conservation																								.	.
Alig confidence														.										.	.																														.	.
Template Conservation														.																																									.	.
Template Sequence		D	G	L	V	H	V	P	L	K	W	F	N	.	Q	D	Y	L	Q	T	Y	L	K	Q	L	T	G	K	E	V	F	V	T	G	T	V	K	S	N	A	Y	T	G	Q	Y	E	I	H	N	A	E	V	T	P	.	.	K	E	G	E	Y	V	R	R	I	L	P	I	Y	R	L	T	S	G	I	S	Q	K	Q	M	R
Template Known Secondary structure			S	S									S	.			T	T						T	T		S	S										S			T	T	S	S											.	.	S			S	S	S	S	S								B	T	T	B
Template Predicted Secondary structure														.																																									.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		K	L	T	D	Q	A	L	D	L	L	D	T	C	A	I	E	E	L	L	P	P	E	L	.	.	S	Q	G	M	M	T	L	P	E	A	L	R	T	L	H	R	P	P	P	T	L	Q	L	S	D	L	E	T	G	Q	H	P	A	Q	R	R	L	I	L	E	E	L	L	A	H	N	L	S	M	L	A	L	R	A	G
Query Conservation																									.	.
Alig confidence												.													.	.																									.	.	.	.	.	.	.
Template Conservation												.																																							.	.	.	.	.	.	.
Template Sequence		K	I	F	E	E	N	I	P	S	L	.	C	C	S	L	K	E	T	L	P	E	R	I	L	E	K	R	K	L	L	G	V	K	D	A	Y	Y	G	M	H	F	P	K	T	F	Y	H	L	E	.	.	.	.	.	.	.	K	A	R	E	R	L	A	Y	E	E	L	F	V	L	Q	L	A	F	Q	K	I	R	K	E
Template Known Secondary structure												.								S													S									S		S	S						.	.	.	.	.	.	.
Template Predicted Secondary structure												.																																							.	.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.								.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	F	H	A	Q	P	L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	A	H	G	K	Q	V	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	K	H	G	G	I	P	K	K	I	E	G	K	L	A	E	E	F	I	K	S	L	P	F	K	L	T	N	A	Q	K	R	A	H	Q	E	I	R	N	D	M	I	S	E	K	P	M	N	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	Q	L	A	I	L	D	N	Y	E	A	G	F	Q	T	A	F
Template Known Secondary structure														T										S	S	S																			S	S	S										S	S	S	S																T	S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	Q	E	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	V	P	T	S	I	L	A	I	Q	H	Y	R	R	T	V	E	S	F	S	K	F	N	I	H	V	A	L	L	I	G	A	T	T	P	S	E	K	E	K	I	K	S	G	L	R	N	G	Q	I	D	V	V	I	G	T	H	A	L	I	Q	E	D	V	H	F	K	N	L	G	L	V	I	I	D	E	Q	H	R	F
Template Known Secondary structure				S																	T		S	S								S	S	S														S	S									T	T									S									S
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C	I	T	E
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.																																																												.
Template Conservation							.	.	.	.	.	.	.	.	.																																																												.
Template Sequence		E	A	L	M	N	.	.	.	.	.	.	.	.	.	K	G	K	M	V	D	T	L	V	M	S	A	T	P	I	P	R	S	M	A	L	A	F	Y	G	D	L	D	V	T	V	I	D	E	M	P	P	G	R	K	E	V	Q	T	M	L	V	P	M	D	R	V	N	E	V	Y	E	F	V	.	R	Q	E	V	M	R
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	.	S	S	S									S	S											T			S	S									S	S											S	S	T									.				T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																																												.
Template SS confidence
		508	.	510	.	.										.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.		.	.	.	.	.	.
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	P	N	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.												.	.
Template Conservation															.	.	.	.	.	.	.	.												.	.
Template Sequence		G	G	Q	A	F	I	V	Y	P	L	I	K	S	.	.	.	.	.	.	.	.	A	V	E	M	Y	E	Y	L	S	K	E	.	.	V	F	K	L	G	L	M	H	G	R	L	S	Q	E	E	K	D	R	V	M	L	E	F	A	E	G	R	Y	D	I	L	V	S	T	T	V	I	E	V	G	I	D	V	P	R	A
Template Known Secondary structure		S			B			B							.	.	.	.	.	.	.	.							S	G	G	G	S	.	.				B					S	S	S			S		S								T	T	T	S	S	S	B				S	S				S		S			T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.												.	.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590									.	.	.	.	.	.	.	.	.	600	.			.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	M	I	I	E	N	P	E	R	L	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L	S	K	T	A	Q	I	R	L	Q	V	L	R	D	S	N	D	G	F	V	I	A	Q	K	D	L	E	I	R	G	P	G	E	L	L	G	T	R	Q	T	G
Query Conservation
Alig confidence																																									.																																	.	.	.	.
Template Conservation																																									.																																	.	.	.	.
Template Sequence		N	V	M	V	I	E	N	P	E	R	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	G	Q	E	A	Y	C	F	L	V	V	G	D	V	.	G	E	E	A	M	E	R	L	R	F	F	T	L	N	T	D	G	F	K	I	A	E	Y	D	L	K	T	R	G	P	G	E	.	.	.	.	K	Q	H	G
Template Known Secondary structure						B		S		S	S	S		T	T								T	S			S	S	T	T									S		.													T				S										S	S					.	.	.	.				S
Template Predicted Secondary structure																																									.																																	.	.	.	.
Template SS confidence
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.		.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.					730	.	.	.
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	E	F	K	V	A	D	L	L	R	D	Q	A	M	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	G	F	K	V	A	D	L	Y	R	D	L	K	L	L	E
Template Known Secondary structure		S			S
Template Predicted Secondary structure
Template SS confidence
		738	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.