Job Description P24230 Confidence 99.94% Date Thu Jan 5 11:41:25 GMT 2012 Rank 59 Aligned Residues 264 % Identity 19% Template c1cu1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus Resolution 2.50 Å

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		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	V	P	M	M	R	L	V	Q	G	D	V	G	S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	A	H	G	K	Q	V	A	L	M	A	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E
Query Conservation
Alig confidence																													.	.	.																											.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.																											.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	.	.	.	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	.	.	.	G	I	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S										T	T	S		T	T	T									.	.	.	T	T								S																	.	.	.									S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.																											.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1194	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220				.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.				.	.	.	1250	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.			.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																			.	.																																									.	.
Query SS confidence																			.	.																																									.	.
Query Sequence		A	I	A	S	G	Q	V	Q	M	I	V	G	T	H	A	I	F	.	.	Q	E	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	L	A	L	W	E	K	G	Q	Q	Q	G	F	H	P	H	.	.	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A
Query Conservation																			.	.																																									.	.
Alig confidence																			.	.																																									.	.										.	.	.	.
Template Conservation																																																																								.	.	.	.
Template Sequence		R	T	I	T	T	G	A	P	V	T	Y	S	T	Y	G	K	F	L	A	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	.	.	.	.	G	S	V	T	V	P
Template Known Secondary structure									S												T	T	S			T	T	S		S					T	T	T	T			S														T	T	T	T	T		S							S	S		T	.	.	.	.	T
Template Predicted Secondary structure																																																																								.	.	.	.
Template SS confidence
		1257	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.					.	.	.	1330	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P	V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Template Sequence		H	P	N	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	G	R	H	L	I	F	C	H	S	K	K	K	.	.	.	.	.	.	.	.	C	D	E	L	A	A	K	L	S	G	L	.	.	G	I	N	A	V
Template Known Secondary structure			T	T								S		S	S				T	T					G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S							S	S				.	.	.	.	.	.	.	.											T	.	.	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Template SS confidence
		1333	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.														1360	.	.	.	.	.	.	.	.	.	1370	.	.	.									.	.	.	.	.	.	1380	.	.	.	.			.	.	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.									.	.	.	570	.	.	.													.	.	.	.	.	.	580	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A	S	F	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	P	N	A	S	L	M	I	.	.	.	.	.	.	.	.	I	E	N	P	E	R	L	.	.	.	.	.	.	.	.	.	.	.	.	G	L	A	Q	L	H	Q	L
Query Conservation																																															.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.																					.							.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																					.
Template Sequence		A	Y	Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.	.	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	G	.	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R
Template Known Secondary structure					T	T	S		G	G	G	S	.	.	.	.	.	.	.		S	S	S	S							T	T								.			S																		S	S	S											B
Template Predicted Secondary structure													.	.	.	.	.	.	.																					.
Template SS confidence
		1390	.	.	.	.	.	.	.	.	.	1400								.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420		.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	R	V	G	R	G	A	V	A	S	H	C	V	L	L	Y	K	T	P	L
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		R	G	R	T	G	R	.	G	R	R	G	I	Y	R	F	V	T	P	G	E	R
Template Known Secondary structure			T	T	S		S	.	S	S							S					B
Template Predicted Secondary structure								.
Template SS confidence
		1462	.	.	.	.	.		.	.	1470	.	.	.	.	.	.	.	.	.	1480	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions