Job Description P0AGB3 Confidence 99.32% Date Thu Jan 5 11:28:39 GMT 2012 Rank 16 Aligned Residues 86 % Identity 23% Template d1smyf2 SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain Resolution 2.70

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	S	Q	P	M	A	P	V	L	Y	L	Q	D	K	S	S	N	F	A	D	G	I	E	D	D	N	W	E	E	Q	A	A	N	R	L	T	D	A	M	Q	G	L	D	E	R	S	Q	D	I	I	R	A	R	W	L	D	E	D	N	K	S	T	L	Q	E	L	A	D	R	Y	G	V	S	A	E	R	V	R	Q
Query Conservation
Alig confidence																				.	.	.																																						.	.	.	.
Template Conservation																				.	.	.																																						.	.	.	.
Template Sequence		G	D	E	K	D	S	F	Y	G	D	F	I	P	D	E	H	L	P	.	.	.	S	P	V	D	A	A	T	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	.	.	.	.	D	G	E	E	V	G	A	F	F	G	V	T	R	E	R	I	R	Q
Template Known Secondary structure		T	T	T	S	S		B	G	G	G	G	S			S	S	S		.	.	.		T																		T	T	S														T	T	.	.	.	.					T	T	T	S	S	S	S
Template Predicted Secondary structure																				.	.	.																																						.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.					.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	K	N	A	M	K	K	L	R	A	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	N	K	A	L	R	K	L	K	Y	H	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions