Job Description P0AGB3 Confidence 35.73% Date Thu Jan 5 11:28:39 GMT 2012 Rank 491 Aligned Residues 113 % Identity 15% Template c2xsdC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna Resolution 2.05 Å

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		151	.	.	.	.	.	.	.	.	160											.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	E	V	E	M	V	A	R	E	.	.	.	.	.	.	.	.	.	.	L	G	V	T	S	K	D	V	R	E	M	E	S	R	M	A	A	Q	D	M	T	F	D	L	S	S	D	D	D	S	D	S	Q	P	M	A	P	V	L	Y	L	Q	D	K	S	S	N	F	A	D	G	I	E	D	D	N	W	E	E	Q
Query Conservation												.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	S	S	D	D	L	E	Q	F	A	K	Q	F	K	Q	R	R	I	K	L	G	F	T	Q	A	D	V	G	L	A	L	G	T	L	Y	G	N	V	F	S	Q	T	T	I	C	R	F	E	A	L	Q	L	S	F	K	N	M	C	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	P	L
Template Known Secondary structure																						T	T															S													T	T		S	B							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.																	.	.	.	310
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		A	A	N	R	L	T	D	A	M	Q	G	L	D	E	R	S	Q	D	I	I	R	A	R	W	L	D	E	D	N	K	S	T	.	.	L	Q	E	L	A	D	R	Y	G	V	S	A	E	R	V	R	Q	L	E	K	N	A	M	K	K	L	R	A
Query Conservation																																		.	.
Alig confidence										.																								.	.
Template Conservation										.
Template Sequence		L	N	K	W	L	E	E	T	.	D	S	I	E	V	G	V	K	G	A	L	E	S	H	F	L	K	C	P	K	P	S	A	H	E	I	T	G	L	A	D	S	L	Q	L	E	K	E	V	V	R	V	W	F	C	N	R	R	Q	K	E	K	R
Template Known Secondary structure										.																			S	S														T																		T	B
Template Predicted Secondary structure										.
Template SS confidence
		311	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions