Job Description P0AGB3 Confidence 99.17% Date Thu Jan 5 11:28:39 GMT 2012 Rank 21 Aligned Residues 84 % Identity 18% Template c2o7gA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the pribnow box recognition region of sigc from2 mycobacterium tuberculosis Resolution 2.70 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	E	E	R	A	L	A	E	K	L	H	Y	H	G	D	L	E	A	A	K	T	L	I	L	S	H	L	R	F	V	V	H	I	A	R	N	Y	A	G	Y	G	L	P	Q	A	D	L	I	Q	E	G	N	I	G	L	M	K	A	V	R	R	F	N	P	E	V	G	V	R	L	V	S	F	A	V	H	W	I	K
Query Conservation
Alig confidence															.																							.																														.	.
Template Conservation															.																							.																														.	.
Template Sequence		D	E	A	V	T	A	L	A	L	S	A	A	K	.	G	N	G	R	A	L	E	A	F	I	K	A	T	Q	Q	D	V	W	R	F	V	A	.	Y	L	S	D	V	G	S	A	D	D	L	T	Q	E	T	F	L	R	A	I	G	A	I	P	R	F	S	A	R	.	.	S	S	A	R	T	W	L	L	A	I	A	R
Template Known Secondary structure														T	.	T																						.			S																				G	G	G				S	.	.	S
Template Predicted Secondary structure															.																							.																														.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.
		111	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	H	E	Y	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	V	V	A	D	H	I	R
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions