Job Description P0AGB3 Confidence 51.20% Date Thu Jan 5 11:28:39 GMT 2012 Rank 401 Aligned Residues 49 % Identity 16% Template c2kt0A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:homeobox protein nanog; PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment Resolution UNK

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		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		L	D	E	R	S	Q	D	I	I	R	A	R	W	L	D	E	D	N	K	.	.	S	T	L	Q	E	L	A	D	R	Y	G	V	S	A	E	R	V	R	Q	L	E	K	N	A	M	K	K	L	R	A
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		F	S	S	T	Q	L	C	V	L	N	D	R	F	Q	R	Q	K	Y	L	S	L	Q	Q	M	Q	E	L	S	N	I	L	N	L	S	Y	K	Q	V	K	T	W	F	Q	N	Q	R	M	K	S	K	R
Template Known Secondary structure																	S	S	S													T	T																T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions