Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGB3
Confidence100.00%DateThu Jan 5 11:28:39 GMT 2012
Rank1Aligned Residues263
% Identity26%Templatec2a6eF_
PDB info PDB header:transferaseChain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   10.........20.........30.........40.....
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Query Sequence  LAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEE. GMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDP
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   75....80.........90.........100........ .110.........120.........130.........140.........150...
 
   46...50.........60.........70.........80.........90.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . DLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGV
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Template Sequence  KTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRF
Template Known Secondary structure  S
TTTS
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TTS

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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   100.........110.........120.........130.........140.........150.........160.........170.........
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Query Sequence  RLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQD
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Template Sequence  KFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQE
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SS


TT
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   234.....240.........250.........260.........270.........280.........290.........300.........310...
 
   180.........190.........200.........210.........220.........230.........240.........250.........
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Query Sequence  MTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADR
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Template Sequence  PVSLETPIGDEKDSFYGDF. . . . . IPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLI. . . . DGEEVGAF
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SS
B
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   314.....320.........330.. .......340.........350.........360.........370...... ...380....
 
   260.........270.........280..
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Query Sequence  YGVSAERVRQLEKNAMKKLRAAI
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Template Sequence  FGVTRERIRQIENKALRKLKYHE
Template Known Secondary structure  SSS
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   390.........400.........410..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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