Job Description P0AGB3 Confidence 99.90% Date Thu Jan 5 11:28:39 GMT 2012 Rank 9 Aligned Residues 173 % Identity 21% Template c1or7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea Resolution 2.00 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	R	A	L	A	E	K	L	H	Y	H	G	D	L	E	A	A	K	T	L	I	L	S	H	L	R	F	V	V	H	I	A	R	N	Y	A	G	Y	G	L	P	Q	A	D	L	I	Q	E	G	N	I	G	L	M	K	A	V	R	R	F	N	P	E	V	G	V	R	L	V	S	F	A	V	H	W	I	K	A	E
Query Conservation
Alig confidence													.																									.																													.	.
Template Conservation													.																									.																													.	.
Template Sequence		T	D	Q	V	L	V	E	R	V	Q	K	.	G	D	Q	K	A	F	N	L	L	V	V	R	Y	Q	H	K	V	A	S	L	V	S	R	Y	.	V	P	S	G	D	V	P	D	V	V	Q	E	A	F	I	K	A	Y	R	A	L	D	S	F	R	G	D	S	.	.	A	F	Y	T	W	L	Y	R	I	A	V	N	T
Template Known Secondary structure												T	.	T																					T	T	T	.	S		G	G	G																G	G	G			S	S	S	.	.
Template Predicted Secondary structure													.																									.																													.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	E	Y	V	L	R	N	W	R	I	V	K	V	A	T	T	K	A	Q	R	K	L	F	F	N	L	R	K	T	K	Q	R	L	G	W	F	N	Q	D	E	V	E	M	V	A	R	E	L	G	V	T	S	K	D	V	R	E	M	E	S	R	M	A	A	Q	D	M	T	F	D	L	S	S	D	D	D	S	D	S
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	N	Y	L	V	A	Q	G	R	R	P	P	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T			T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	M	A	P	V	L	Y	L	Q	D	K	S	S	N	F	A	D	G	I	E	D	D	N	W	E	E	Q	A	A	N	R	L	T	D	A	M	Q	G	L	D	E	R	S	Q	D	I	I	R	A	R	W	L	D	E	D	N	K	S	T	L	Q	E	L	A	D	R	Y	G	V	S	A	E	R	V	R	Q	L	E	K
Query Conservation
Alig confidence		.	.	.	.	.	.																																																		.	.	.
Template Conservation		.	.	.	.	.	.																																																		.	.	.
Template Sequence		.	.	.	.	.	.	D	V	D	A	I	E	A	E	N	F	E	S	G	G	A	N	L	M	L	S	E	E	L	R	Q	I	V	F	R	T	I	E	S	L	P	E	D	L	R	M	A	I	T	L	R	E	L	D	G	.	.	.	L	S	Y	E	E	I	A	A	I	M	D	C	P	V	G	T	V	R	S	R	I	F
Template Known Secondary structure		.	.	.	.	.	.									S			S	S																					S													T	T		.	.	.										T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																																																		.	.	.
Template SS confidence
								97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	M	K	K	L	R	A	A	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	R	E	A	I	D	N	K	V	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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