Job Description P0AGB3 Confidence 100.00% Date Thu Jan 5 11:28:39 GMT 2012 Rank 2 Aligned Residues 255 % Identity 27% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	N	L	D	S	Y	I	R	A	A	N	A	W	P	M	L	S	A	D	E	E	R	A	L	A	E	K	L	H	Y	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.
Template Sequence		S	D	P	V	R	Q	Y	L	H	E	I	G	Q	V	P	L	L	T	L	E	E	E	I	D	L	A	R	K	V	E	E	.	G	M	E	A	I	K	K	L	S	E	A	T	G	L	D	Q	E	L	I	R	E	V	V	R	A	K	I	L	G	T	A	R	V	E	E	V	D	G	K	L	K	S	L	P	K	E	L	K
Template Known Secondary structure				S									T	T	S					T	T	T	T	T	T	T	T						.												T	T		T	T												T	T	T	S	S			T	T						S			T	T		S
Template Predicted Secondary structure																																	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
										46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	D	L	E	A	A	K	T	L	I	L	S	H	L	R	F	V	V	H	I	A	R	N	Y	A	G	Y	G	L	P	Q	A	D	L	I	Q	E	G	N	I	G	L	M	K	A	V	R	R	F	N	P	E	V	G	V	R	L	V	S	F	A	V	H	W	I	K	A	E	I	H	E	Y	V
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	L	H	I	A	R	E	G	E	A	A	R	Q	H	L	I	E	A	N	L	R	L	V	V	S	I	A	K	K	Y	T	G	R	G	L	S	F	L	D	L	I	Q	E	G	N	Q	G	L	I	R	A	V	E	K	F	E	Y	K	R	R	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	N	R	A	I
Template Known Secondary structure											T	T	G	G	G	S	S	S	S	S							T	T	T	T	S	T	T	S	S	S	S																	T	T	S			S	S	S	T	T		S	S	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	N	W	R	I	V	K	V	A	T	T	K	A	Q	R	K	L	F	F	N	L	R	K	T	K	Q	R	L	G	W	F	N	Q	D	E	V	E	M	V	A	R	E	L	G	V	T	S	K	D	V	R	E	M	E	S	R	M	A	A	Q	D	M	T	F	D	L	S	S	D	D	D	S	D	S	Q	P	M	A	P
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		A	D	Q	A	R	T	I	R	I	P	V	H	M	V	E	T	I	N	K	L	S	R	T	A	R	Q	L	Q	Q	E	L	G	R	E	P	S	Y	E	E	I	A	E	A	M	G	P	G	W	D	A	K	R	V	E	E	T	L	K	I	A	Q	E	P	V	S	L	E	T	P	I	D	F	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S	S	S	S																								S	S	S											S		S	S											T	T		S	S		S			S		S	S	S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		V	L	Y	L	Q	D	K	S	S	N	F	A	D	G	I	E	D	D	N	W	E	E	Q	A	A	N	R	L	T	D	A	M	Q	G	L	D	E	R	S	Q	D	I	I	R	A	R	W	.	L	D	E	D	N	K	S	T	L	Q	E	L	A	D	R	Y	G	V	S	A	E	R	V	R	Q	L	E	K	N	A	M	K
Query Conservation																																																	.
Alig confidence		.	.	.	.	.	.																																										.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	I	P	D	E	N	L	P	S	P	V	E	A	A	A	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	D	G	R	E	H	T	L	E	E	V	G	A	Y	F	G	V	T	R	E	R	I	R	Q	I	E	N	K	A	L	R
Template Known Secondary structure		.	.	.	.	.	.						T	T		T	T																T	T	S	S		T	T	T	T					T	T	S	S	T	T	S	S										T	T	S		S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		277	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	R	A	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	K	Y	H	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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