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Job DescriptionP39400
Confidence100.00%DateThu Jan 5 12:00:35 GMT 2012
Rank28Aligned Residues330
% Identity19%Templatec1yqxB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:sinapyl alcohol dehydrogenase; PDBTitle: sinapyl alcohol dehydrogenase at 2.5 angstrom resolution
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDIHAWGGNQPFFSYPRVLGHEICGEIVGLGKNIADLKN
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Template Sequence  VKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKVNV
Template Known Secondary structure 
STT





TT

TTTS


SSB





TT

S

T
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   11........20.........30.........40.........50.........60.........70.........80.........90
 
   81...... ..90.........100.........110... ......120.........130.........140.........150.
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Query Sequence  GQQVAVI. PYVACQQCPACKSGRTNCCEKISVIG. . . . . . . VHQDGGFSEYLSVPVANILPADGIDPQAAALIEPFAIS.
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Template Sequence  GDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGIT
Template Known Secondary structure  T

S

SSSTT
GGG
TT
SSSSB
TTS
B


SSBSGGG


TTS
GGGGT
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   152.......160.........170.........180.........190.........200.........210.........220........
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Query Sequence  . . . AHAVRRAAIAPGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPLLDPSAEDFDAQLRAQFGG
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Template Sequence  VYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTL. .
Template Known Secondary structure  TT

STT


ST
S
GGGTT

STT
TTT
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   171........180.........190.........200.........210.........220.........230.........240........
 
   229230.........240.........250.........260.........270.........280.........290.........300........
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Query Sequence  SLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHKKETTMMGSRNATPEDFAKVGRLMAEGKITADM
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Template Sequence  . . . DGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNITA. .
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S



SS




TTT


S

TT


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   249250.........260.........270.........280.........290.........300.........310.........320...
 
   309310.........320.........330.........
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Query Sequence  MLTHRYPFATLAETYERDVINNRELIKGVIT
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Template Sequence  . DIEVISTDYLNTAMER. LAKNDVRYRFVID
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GGG.TT
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   324.....330......... 340.........350..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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