Phyre 2 alignment of P39400 with c1p0fA

Job Description P39400
Confidence 100.00% Date Thu Jan 5 12:00:35 GMT 2012

Rank 25 Aligned Residues 334

% Identity 19% Template c1p0fA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: crystal structure of the binary complex: nadp(h)-dependent vertebrate2 alcohol dehydrogenase (adh8) with the cofactor nadp

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence	T	M	N	V	L	I	C	Q	Q	P	K	E	.	L	V	W	K	Q	R	E	I	P	I	P	G	D	N	E	A	L	I	K	I	K	S	V	G	I	C	G	T	D	I	H	A	W	G	G	N	Q	P	F	F	S	Y	P	R	V	L	G	H	E	I	C	G	E	I	V	G	L	G	K	N	I	A	D	L	K	N	G
Query Conservation													.
Alig confidence													.																																							.
Template Conservation																																																				.
Template Sequence	T	C	K	A	A	V	A	W	E	P	H	K	P	L	S	L	E	T	I	T	V	A	P	P	K	A	H	E	V	R	I	K	I	L	A	S	G	I	C	G	S	D	S	S	V	L	K	E	I	I	P	.	S	K	F	P	V	I	L	G	H	E	A	V	G	V	V	E	S	I	G	A	G	V	T	C	V	K	P	G
Template Known Secondary structure							B	S	S	T	T	S														T	T																				T	T	S	S		.			S	S	B															T	T			S			T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
	1008	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.		.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																									.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Q	Q	V	A	V	I	P	Y	V	A	C	Q	Q	C	P	A	C	K	S	G	R	T	N	C	C	E	K	I	S	V	I	G	V	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	G	F	S	E	Y	L	S	V	P	V	A	N	I	L	P	A	D	G	I
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	K	V	I	P	L	F	V	P	Q	C	G	S	C	R	A	C	K	S	S	N	S	N	F	C	E	K	N	D	M	G	A	K	T	G	L	M	A	D	M	T	S	R	F	T	C	R	G	K	P	I	Y	N	L	M	G	T	S	T	F	T	E	Y	T	V	V	A	D	I	A	V	A	K	I	D	P	K	A	P	L
Template Known Secondary structure							S	S				S	S	S						T	T					T	T		S	T	T	T				S		T	T	S			S				T	T				B		S	T	T	T			S	B	S						T	T	S						T	T			G
Template Predicted Secondary structure
Template SS confidence
	1087	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.

	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence	D	P	Q	A	A	A	L	I	E	P	F	A	I	S	A	H	A	V	R	R	A	A	I	A	P	G	E	Q	V	L	V	V	G	A	G	P	I	G	L	G	A	A	A	I	A	K	A	D	G	A	Q	V	V	V	A	D	T	S	P	A	R	R	E	H	V	A	T	R	L	E	L	P	L	L	D	P	.	.	S	A
Query Conservation																																																																													.	.
Alig confidence																																																																													.	.
Template Conservation
Template Sequence	E	S	C	L	I	G	C	G	F	A	T	G	Y	G	A	A	V	N	T	A	K	V	T	P	G	S	T	C	A	V	F	G	L	G	G	V	G	F	S	A	I	V	G	C	K	A	A	G	A	S	R	I	I	G	V	G	T	H	K	D	K	F	P	K	A	I	E	L	G	A	T	E	C	L	N	P	K	D	Y	D
Template Known Secondary structure	G	G	G	G	G	G	T											T	T	T				T	T									S														T		S							S		G	G	G							T	T		S					G	G	G		S
Template Predicted Secondary structure
Template SS confidence
	1167	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.

	216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.
Predicted Secondary structure																																																								.																	.	.
Query SS confidence																																																								.																	.	.
Query Sequence	E	D	F	D	A	Q	L	R	A	Q	F	G	G	S	L	A	Q	K	V	I	D	A	T	G	N	Q	H	A	M	N	N	T	V	N	L	I	R	H	G	G	T	V	V	F	V	G	L	F	K	G	E	L	Q	F	S	.	D	P	E	F	H	K	K	E	T	T	M	M	G	S	R	N	.	.	A	T	P	E	D	F
Query Conservation																																																								.																	.	.
Alig confidence																																																								.																	.	.
Template Conservation
Template Sequence	K	P	I	Y	E	V	I	C	E	K	T	N	G	G	V	D	Y	A	V	E	C	A	G	R	I	E	T	M	M	N	A	L	Q	S	T	Y	C	G	S	G	V	T	V	V	L	G	L	A	S	P	N	E	R	L	P	L	D	P	L	L	L	L	T	G	R	S	L	K	G	S	V	F	G	G	F	K	G	E	E	V
Template Known Secondary structure	S										T	T	S		B	S						S												T	B		T	T	T											T	T							T					T	T							S	G	G	G			G	G	G
Template Predicted Secondary structure
Template SS confidence
	1247	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.

	293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	K	V	G	R	L	M	A	E	G	K	I	T	A	D	M	M	L	T	H	R	Y	P	F	A	T	L	A	E	T	Y	E	R	D	V	I	N	N	R	E	L	I	K	G	V	I
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence	S	R	L	V	D	D	Y	M	K	K	K	I	N	V	N	F	L	V	S	T	K	L	T	L	D	Q	I	N	K	A	F	E	.	L	L	S	S	G	Q	G	V	R	S	I	M	I
Template Known Secondary structure									T	T	S	S		G	G	G	G							G	G	G							.		T	T	T	S	S		S
Template Predicted Secondary structure																																	.
Template SS confidence
	1327	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.		.	1360	.	.	.	.	.	.	.	.	.	1370	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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