Job Description P0ACK5 Confidence 95.74% Date Wed Jan 25 15:20:23 GMT 2012 Rank 128 Aligned Residues 141 % Identity 13% Template c3kv1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri Resolution 1.70 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		E	E	K	R	R	A	A	K	L	A	A	T	L	.	.	.	.	V	E	P	D	Q	T	L	F	F	D	C	G	T	T	T	P	W	I	I	E	A	I	D	N	E	I	P	F	T	A	V	C	Y	S	L	N	T	F	L	A	L	K	E	K	P	H	C	R	A	F	L	C	G	G	E	F	H	A	S	N	A	I	F
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	G	I	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	N	A	R	F	V	S	A	I	G	G	T	H	I	I	N	.	.	.
Template Known Secondary structure																					T	T								S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	B		B						.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	I	D	F	Q	Q	T	L	N	N	F	C	P	D	I	A	F	Y	S	A	A	G	V	H	V	S	K	G	A	T	C	F	N	L	E	E	L	P	V	K	H	W	A	M	S	M	A	Q	K	H	V	L	V	V	D	H	S	K	F	G	K	V	R	P	A	R	M	G	D	L	K	R	F	D	I	V	V	S	D
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A	L	.	.	.	.	.	.	.	.	.	.	.	V	G	I	G	D	X	D	E	N	S	H	X	V	K	L
Template Known Secondary structure														T								S	B	S	B		S	S									T	S												T		S				.	.	.	.	.	.	.	.	.	.	.										T					T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150												.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		233	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		C	C	P	E	D	E	Y	V	.	K	Y	A	Q	T	Q	R	I
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		G	F	F	T	P	K	E	F	V	E	A	R	L	N	D	G	I
Template Known Secondary structure		T	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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