Job Description P0ACK5 Confidence 98.14% Date Wed Jan 25 15:20:23 GMT 2012 Rank 25 Aligned Residues 162 % Identity 13% Template c3ecsD_ PDB info PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha Resolution 2.65 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.																	.											.	.	.	.	.	.	.
Query SS confidence																													.																	.											.	.	.	.	.	.	.
Query Sequence		S	D	Q	K	S	R	L	V	E	E	K	R	R	A	A	K	L	A	A	T	L	V	E	P	D	Q	T	.	L	F	F	D	C	G	T	T	T	P	W	I	I	E	A	I	.	D	N	E	I	P	F	T	A	V	C	.	.	.	.	.	.	.	Y	S	L	N	T	F	L	A	L	K	E	K	P	H	C	R	A	F
Query Conservation																													.																	.											.	.	.	.	.	.	.
Alig confidence																													.																	.											.	.	.	.	.	.	.													.
Template Conservation																																																																												.
Template Sequence		E	L	F	L	R	R	I	S	L	S	R	N	K	I	A	D	L	C	H	T	F	I	K	D	G	A	T	I	L	T	H	A	Y	S	R	V	V	L	R	V	L	E	A	A	V	A	A	K	K	R	F	S	V	Y	V	T	E	S	Q	P	D	L	S	G	K	K	X	A	K	A	L	C	H	L	.	N	V	P	V	T
Template Known Secondary structure																					T	T			T	T							S															T	T											T	T	T	T											T	T	.	T
Template Predicted Secondary structure																																																																												.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		L	C	G	G	E	F	H	A	S	N	A	I	F	K	P	I	D	F	Q	Q	T	L	N	N	F	C	P	D	I	A	F	Y	S	A	A	G	V	H	V	S	K	G	A	T	C	F	N	L	E	E	L	P	V	K	H	W	A	M	S	M	A	Q	K	H	V	L	V	V	D	H	S	K	F	G	K	V	R	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.													.	.																						.																														.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.													.	.																						.
Template Sequence		V	.	.	.	.	.	.	.	.	.	.	.	V	L	D	A	A	V	G	Y	I	X	E	K	.	.	A	D	L	V	I	V	G	A	E	G	V	V	E	N	G	G	I	I	N	K	I	.	G	T	N	Q	X	A	V	C	A	K	A	Q	N	K	P	F	Y	V	V	A	E	S	F	K	F	V	R	L	F	P	L	N
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.			G	G	G					G	G	G	.	.		S							S				T	T	S						T	.	T											T	T									G	G	G	B		S				S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.													.	.																						.
Template SS confidence
		177												.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
																								217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	R	M	G	D	L	K	R	F	D	I	V	V	S	D	C	.	.	C	P	E	D	E	Y	V	K	Y	A	Q	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		Q	Q	D	V	P	D	K	F	K	Y	K	A	D	G	Q	D	L	K	E	E	H	P	W	V	D	Y	T	A	P	S	L	I	T	L	L	F	T	D	L	G	V	L	T	P	S	A	V	S	D	E	L	I	K
Template Known Secondary structure		G	G	G	S						S	S					S							S						G	G	G		S					T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions