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Job DescriptionP32712
Confidence91.25%DateThu Jan 5 11:50:34 GMT 2012
Rank118Aligned Residues169
% Identity13%Templatec3mkrB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60......... 70.
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Query Sequence  GSYLLSPKWQAVRAEYQRQRDPLHQFASQQTPEAQLQALQDKIRAN. . . . . . . . . . . . . . . . . . . . PQ. . . . . . . . . . . .
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Template Sequence  GFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPN
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TT
S
B


GGGTTS

SSTTS



B
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   905....910.........920.........930.........940.........950.........960.........970.........980....
 
   72.......80.........90.........100.. .......110.........120
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Query Sequence  . . . . . . . . . . . . . . . . . . . . NSEQWALLGEYYLWQNDYSNSLLAYRQALQL. . . . . RGENAELYAALATVLYYQ. . . . . .
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Template Sequence  RNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGL
Template Known Secondary structure  TTTTT

SSS

B




TT
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S
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   985....990.........1000.........1010.........1020.........1030.........1040.........1050.........1060....
 
   121........130.........140.........150.........160.........170.........180......
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Query Sequence  . . . . . . . . . . . . . . ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRVNRTQLVES
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Template Sequence  SMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKI
Template Known Secondary structure  TTS


STTS


TTBT


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   1065....1070.........1080.........1090.........1100.........1110.........1120.........1130.........1140....
 
   187..190..
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Query Sequence  INMAKL
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Template Sequence  LSACEK
Template Known Secondary structure 
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   1145....1150
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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