Job Description P32712 Confidence 99.82% Date Thu Jan 5 11:50:34 GMT 2012 Rank 4 Aligned Residues 167 % Identity 14% Template c2xpiA_ PDB info PDB header:cell cycle Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9; PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1 Resolution 2.60 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.												.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	M	V	F	L	C	V	G	S	Y	L	L	S	P	K	W	Q	A	V	R	A	E	Y	Q	R	Q	R	D	P	L	H	Q	.	.	.	.	.	.	.	.	.	.	.	F	A	S	Q	Q	T	P	E	A	Q	L	Q	A	L	Q	D	K	I	R	A	N	P	Q	N	S	E	Q	W	A	L	L	G	E	Y	Y	L
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	A	W	I	G	F	A	H	S	F	A	I	E	G	E	H	D	Q	A	I	S	A	Y	T	T	A	A	R	L	F	Q	G	T	H	L	P	Y	L	F	L	G	M	Q	H	M	Q	L	G	N	I	L	L	A	N	E	Y	L	Q	S	S	Y	A	L	F	Q	Y	D	P	L	L	L	N	E	L	G	V	V	A	F
Template Known Secondary structure																T															T	T	T	T		S														T
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.
Query Sequence		W	Q	N	D	Y	S	N	S	L	L	A	Y	R	Q	A	L	Q	L	R	G	E	N	.	.	.	.	.	.	.	A	E	L	Y	A	A	L	A	T	V	L	Y	Y	Q	A	S	Q	H	M	T	A	Q	T	R	A	M	I	D	K	A	L	A	L	D	S	N	E	I	T	A	L	M	L	L	A	S	D	A	F	M	Q
Query Conservation																								.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.													.	.	.
Template Conservation																																											.	.	.
Template Sequence		N	K	S	D	M	Q	T	A	I	N	H	F	Q	N	A	L	L	L	V	K	K	T	Q	S	N	E	K	P	W	A	A	T	W	A	N	L	G	H	A	Y	R	.	.	.	K	L	K	M	Y	D	A	A	I	D	A	L	N	Q	G	L	L	L	S	T	N	D	A	N	V	H	T	A	I	A	L	V	Y	L	H	K
Template Known Secondary structure			T	T																			S				S	G	G	G													.	.	.		T	T																S	S																T
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.				.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	Y	A	Q	A	I	E	L	W	Q	K	V	M	D	L	N	S	P	R	V	N	R	T	Q	L	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	P	G	L	A	I	T	H	L	H	E	S	L	A	I	S	P	N	E	I	M	A	S	D	L	L	K
Template Known Secondary structure		T																	T	T
Template Predicted Secondary structure
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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