Return to main results Retrieve Phyre Job Id

Job DescriptionP22709
Confidence15.76%DateThu Jan 5 11:39:04 GMT 2012
Rank2Aligned Residues27
% Identity30%Templatec2hcnA_
PDB info PDB header:transferaseChain: A: PDB Molecule:rna-directed rna polymerase (ns5); PDBTitle: crystal structure of rna dependent rna polymerase domain from west2 nile virus
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   71........80.........90.........100...
Predicted Secondary structure 





Query SS confidence 
































Query Sequence  FALVWGLNLSRHAHIRQLAINRLWGWAVFSQFW
Query Conservation 
 
 




 


 
 



 

 








Alig confidence 









.



.....












Template Conservation 




 
 

.



.....


   

 



Template Sequence  YAQMWLLLYF. HRRD. . . . . LRLMANAICSAVP
Template Known Secondary structure  ST.TS.....S
Template Predicted Secondary structure  ......

Template SS confidence 
































   763......770.. .... ...780.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions