Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 45 Aligned Residues 276 % Identity 14% Template c3tqtB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii Resolution 1.88 Å

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		14	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	M	L	L	G	S	G	E	.	.	.	.	.	.	.	.	.	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	S	V	L	C	G	G	Q	S	T	E	H	E	I	S	I	Q	S	A	K	N	I	V	N	T	L	D	A	A	K	Y	L	I	S	V	I	F	I	D	H	V	G	R	W	Y	L	I	D	Q	P	E	M	F	L	A	H	S	P	D	H	L	V	K	E	G	S	A	R	P	I	T	I	A	F	K	P	W	Q	S
Template Known Secondary structure										S	S	T	T															S		T	T	T										T	T	S														S									T		S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
						73	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.	.	.														.	.	.																	.
Query SS confidence		.	.	.	.														.	.	.																	.
Query Sequence		.	.	.	.	L	E	K	P	H	Y	I	V	P	E	I	E	A	.	.	.	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A
Query Conservation		.	.	.	.														.	.	.																	.
Alig confidence		.	.	.	.														.	.	.																	.																			.
Template Conservation																																																									.
Template Sequence		L	D	G	R	R	Y	S	A	D	C	V	F	P	M	V	H	G	T	Q	G	E	D	G	A	L	Q	G	L	L	E	L	L	N	L	P	Y	V	G	A	N	V	Q	S	S	A	V	C	M	E	K	D	L	T	K	T	.	V	L	R	A	G	G	I	P	V	V	D	W	H	T	L	S	P	R	D	A	T	E	G	V
Template Known Secondary structure										S								S	T	T	T	T	S	S									T	T			B	S	S											S							.					T	T			B								T	T	S			T	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		145	.	.						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		V	A	D	.	.	.	.	.	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.																																								.	.	.	.											.																	.	.
Template Conservation																																																	.	.	.	.											.																	.	.
Template Sequence		Y	Q	R	L	L	D	R	W	G	T	S	E	L	F	V	K	A	V	S	L	G	S	S	V	A	T	L	P	V	K	T	E	T	E	F	T	K	A	V	K	E	V	F	R	Y	D	D	.	.	.	.	R	L	M	V	E	P	R	I	R	G	.	R	E	I	E	C	A	V	L	G	N	G	A	P	K	A	S	.	.
Template Known Secondary structure										S		S							S	S			S	G	G	G						S												T	T	T		S	.	.	.	.										S	.										S	S	S					.	.
Template Predicted Secondary structure																																																	.	.	.	.											.																	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.
Predicted Secondary structure																																																									.																			.	.	.	.
Query SS confidence																																																									.																			.	.	.	.
Query Sequence		P	V	G	H	R	Q	E	D	G	D	Y	R	E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	.	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	V	T	L	.	.	.	.	I	S
Query Conservation																																																									.																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																														.																			.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	L	P	G	E	I	I	T	T	T	T	S	E	S	V	T	K	Q	I	Q	Q	I	A	I	D	A	F	K	M	V	H	C	S	G	M	A	R	V	D	F	F	V	T	P	N	N	K	V	L	V	N	E	I	N	T	I	P	G	F	T	N	I	S	M	Y	P	K	M	W	E	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.																													T	T													T	T										S	S				S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	L	S	E	F	A	L	H	V	R	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	L	P	C	P	N	L	L	D	Q	L	I
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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