Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 41 Aligned Residues 268 % Identity 13% Template c3r23B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis Resolution 2.50 Å

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		12	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.
Query Sequence		A	T	R	V	M	L	L	G	S	G	E	.	.	.	.	.	.	.	.	.	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E
Query Conservation													.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	X	R	I	G	V	I	X	G	G	V	S	S	E	K	Q	V	S	I	X	T	G	N	E	X	I	A	N	L	D	K	N	K	Y	E	I	V	P	I	T	L	N	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	D	L	I	E	K	A	K	D	I	D	F	A	L	L	A
Template Known Secondary structure												S																		S		T	T	T									S	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G					G	G	G		S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		83	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.																	.																																									.
Query SS confidence					.	.	.																	.																																									.
Query Sequence		I	E	A	.	.	.	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	.	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V
Query Conservation					.	.	.																	.																																									.
Alig confidence					.	.	.																	.																			.																						.
Template Conservation																																											.
Template Sequence		L	H	G	K	Y	G	E	D	G	T	V	Q	G	T	L	E	S	L	G	I	P	Y	S	G	S	N	X	L	S	S	G	I	C	X	D	K	N	I	S	K	K	.	I	L	R	Y	E	G	I	E	T	P	D	W	I	E	L	T	K	X	E	D	L	N	F	D	E	L	D	K	L	G	F	P	L	V	V	K	P	N
Template Known Secondary structure				S					S	S									T	T			B	S	S	S																	.					T	T											S	S	S								T	T	T		S	S						S
Template Predicted Secondary structure																																											.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	.	.	.	.	.	E	D	G	D	Y	R	E
Query Conservation																																																																						.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.													.																									.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.													.
Template Sequence		S	G	G	V	K	I	V	Y	D	K	D	E	L	I	S	X	L	E	T	V	F	E	W	.	.	.	.	.	.	.	.	D	S	E	V	V	I	E	K	Y	I	K	G	.	E	E	I	T	C	S	I	F	D	G	K	Q	L	P	I	I	S	I	R	H	A	A	E	F	F	D	Y	N	A	K	Y	D	D	A	S	T
Template Known Secondary structure										S	T	T													.	.	.	.	.	.	.	.		S										S	.									T	T																T	T	T	T				S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.													.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.									.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.										.	.	.
Query SS confidence																																																											.	.	.	.										.	.	.
Query Sequence		S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	.	.	.	.	V	T	L	I	S	Q	D	L	S	.	.	.	E	F	A	L	H	V	R
Query Conservation																																																											.	.	.	.										.	.	.
Alig confidence																																																											.	.	.	.										.	.	.
Template Conservation
Template Sequence		I	E	E	V	I	E	L	P	A	E	L	K	E	R	V	N	K	A	S	L	A	C	Y	K	A	L	K	C	S	V	Y	A	R	V	D	X	X	V	K	D	G	I	P	Y	V	X	E	V	N	T	L	P	G	X	T	Q	A	S	L	L	P	K	S	A	D	A	A	G	I	H	Y	S	K	L	L	D	X	I	I	E
Template Known Secondary structure																											T	T			S										T	T									S	S				S	T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		306	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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