Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 22 Aligned Residues 367 % Identity 17% Template c3n6rK_ PDB info PDB header:ligase Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) Resolution 3.20 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.								60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																															.	.																			.	.	.	.	.	.	.
Query SS confidence																															.	.																			.	.	.	.	.	.	.
Query Sequence		T	R	V	M	L	L	G	S	G	E	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	.	.	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	.	.	.	.	.	.	.	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E	I
Query Conservation																															.	.																			.	.	.	.	.	.	.
Alig confidence																															.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	I	L	I	A	N	R	G	E	I	A	C	R	V	I	K	T	A	R	K	M	G	I	S	T	V	A	I	Y	S	D	A	D	K	Q	A	L	H	V	Q	M	A	D	E	A	V	H	I	G	P	P	P	A	N	Q	S	Y	I	V	I	D	K	V	M	A	A	I	R	A	T	G	A	Q	A	V	H	P	G	Y
Template Known Secondary structure				B		B	S														G	G	G	S			B						S	T	T	S	S							S	S						S	S	S	S	G	G	G	T	T	S												T			S			B			S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		84	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																	.																																	.	.
Query SS confidence				.	.																	.																																	.	.
Query Sequence		E	A	.	.	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	.	.	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M
Query Conservation				.	.																	.																																	.	.
Alig confidence				.	.																	.																			.														.	.																								.	.
Template Conservation																																									.																																							.	.
Template Sequence		G	F	L	S	E	N	S	K	F	A	E	A	L	E	A	E	G	V	I	F	V	G	P	P	K	G	A	I	E	A	M	G	D	K	I	T	S	K	K	.	I	A	Q	E	A	N	V	S	T	V	P	G	Y	M	G	L	I	E	D	A	D	E	A	V	K	I	S	N	Q	I	G	Y	P	V	M	I	K	A	.	.
Template Known Secondary structure		S	S	S	T	T										T	T	T				S	S	S								T	T	S							.				T	T	T													S													S	S						.	.
Template Predicted Secondary structure																																									.																																							.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	.	.	Q	E	D	G	D	Y	R	E	S	W	Q	P
Query Conservation																																																																				.	.
Alig confidence		.	.	.	.																				.	.	.	.	.	.																																						.	.
Template Conservation		.	.	.	.																				.	.	.	.	.	.
Template Sequence		.	.	.	.	S	A	M	R	I	A	W	N	D	Q	E	A	R	E	G	F	Q	S	S	.	.	.	.	.	.	K	N	D	R	I	F	I	E	K	F	V	T	Q	P	R	H	I	E	I	Q	V	L	C	D	S	H	G	N	G	I	Y	L	G	E	R	E	C	S	I	Q	R	R	N	Q	K	V	V	E	E	A	P
Template Known Secondary structure		.	.	.	.						B		S												.	.	.	.	.	.	T											S	S												T	T	S															T	T								S
Template Predicted Secondary structure		.	.	.	.																				.	.	.	.	.	.
Template SS confidence
						221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.							240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		237		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure			.																																						.																																								.
Query SS confidence			.																																						.																																								.
Query Sequence		Q	.	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	.	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	V	T	L	I	S	Q	D	L	S	E	F	A	L	H	V	R	A	F	L	G	L	P	V	G	.
Query Conservation			.																																						.																																								.
Alig confidence			.																																						.																																								.
Template Conservation
Template Sequence		S	P	F	L	D	E	A	T	R	R	A	M	G	E	Q	A	V	A	L	A	K	A	V	G	Y	A	S	A	G	T	V	E	F	I	V	D	G	Q	K	N	F	Y	F	L	E	M	N	T	R	L	Q	V	E	H	P	V	T	E	L	I	T	G	V	D	L	V	E	Q	M	I	R	V	A	A	G	E	P	L	S	I
Template Known Secondary structure			S	S																			T	T	T			S										T	T	S										S			T	T									T											T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
					314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.					.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure		.	.	.																						.	.	.	.	.																									.	.	.	.
Query SS confidence		.	.	.																						.	.	.	.	.																									.	.	.	.
Query Sequence		.	.	.	G	I	R	Q	Y	G	P	A	A	S	A	V	I	L	P	Q	L	T	S	Q	N	.	.	.	.	.	V	T	F	D	N	V	Q	N	A	V	G	A	D	L	Q	I	R	L	F	G	K	P	E	I	.	.	.	.	D	G	S	R	R	L	G	V	A	L	A	T	A	E	S	V	V	D	A	I	E	R	A
Query Conservation		.	.	.																						.	.	.	.	.																									.	.	.	.
Alig confidence		.	.	.																						.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		T	Q	G	D	V	K	L	T	G	W	A	I	E	N	R	L	Y	A	E	D	P	Y	R	G	F	L	P	S	I	G	R	L	T	R	Y	R	P	P	A	E	A	A	V	R	N	D	T	G	V	Y	E	G	G	E	I	S	M	Y	Y	D	P	M	I	A	K	L	C	T	W	A	P	T	R	A	A	A	I	E	A	M
Template Known Secondary structure			T	T	T					S									S			G	G	G	T	T								S															S			T	T					T	T	S		S										S	S
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	A	A	G	Q	V	K	V	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	A	L	D	S	F	E	V	E	G
Template Known Secondary structure												S
Template Predicted Secondary structure
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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