Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 33 Aligned Residues 285 % Identity 23% Template c3lwbA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis Resolution 2.10 Å

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		13	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																																																																.	.	.
Query SS confidence												.	.	.	.																																																																.	.	.
Query Sequence		T	R	V	M	L	L	G	S	G	E	.	.	.	.	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E	I	E	A	.	.	.
Query Conservation												.	.	.	.																																																																.	.	.
Alig confidence												.	.	.	.																								.	.	.	.	.	.	.																																		.	.	.
Template Conservation																																							.	.	.	.	.	.	.
Template Sequence		V	R	V	A	V	V	F	G	G	A	I	S	C	V	S	A	G	S	I	L	R	N	L	D	S	R	R	F	D	V	I	A	V	G	I	T	P	.	.	.	.	.	.	.	A	G	S	W	V	L	T	D	A	N	V	S	L	P	P	G	A	G	E	V	L	E	S	V	D	V	V	F	P	V	L	H	G	P	Y	G
Template Known Secondary structure																								S		T	T	T										T	.	.	.	.	.	.	.	T														T	T							T		S									T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																		.																																					.	.
Query SS confidence																		.																																					.	.
Query Sequence		I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	.	.	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G
Query Conservation																		.																																					.	.
Alig confidence																		.																			.																		.	.
Template Conservation																																					.
Template Sequence		E	D	G	T	I	Q	G	L	L	E	L	A	G	V	P	Y	V	G	A	G	V	L	A	S	A	V	G	M	D	K	E	F	T	K	K	.	L	L	A	A	D	G	L	P	V	G	A	Y	A	V	L	R	P	P	R	S	T	L	H	R	Q	E	C	E	R	L	G	L	P	V	F	V	K	P	A	R	G	G	S	S
Template Known Secondary structure														T			B	S	S	S										B							.					T	T			B								T	T														S							S	B		S	T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	E	D	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.											.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.											.
Template Sequence		I	G	V	S	R	V	S	S	W	D	Q	L	P	A	A	V	A	R	A	R	R	H	D	P	.	.	.	.	K	V	I	V	E	A	A	I	S	G	.	R	E	L	E	C	G	V	L	E	M	P	D	G	T	L	E	A	S	T	L	G	E	I	R	V	A	G	V	R	G	R	E	D	S	F	Y	D	F	A	T	K
Template Known Secondary structure		T	T						S	G	G	G										T	T		S	.	.	.	.	S										.											T	T	S														S	T	T		S			S	S	S
Template Predicted Secondary structure																										.	.	.	.											.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure		.	.	.	.																																																											.	.	.	.
Query SS confidence		.	.	.	.																																																											.	.	.	.
Query Sequence		.	.	.	.	Y	R	E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	.	.	.	.	G	M	V	T	L	I	S	Q	D	L	S	E	F	A
Query Conservation		.	.	.	.																																																											.	.	.	.
Alig confidence		.	.	.	.																																																											.	.	.	.
Template Conservation
Template Sequence		Y	L	D	D	A	A	E	L	D	V	P	A	K	V	D	D	Q	V	A	E	A	I	R	Q	L	A	I	R	A	F	A	A	I	D	C	R	G	L	A	R	V	D	F	F	L	T	D	D	G	P	V	I	N	E	I	N	T	M	P	G	F	T	T	I	S	M	Y	P	R	M	W	A	A	S	G	V	D	Y	P	T
Template Known Secondary structure			T		T	T					S	S																						T	T			S										T	T									S	S				S	T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		302				.	.	.	.	.	.	.	310
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		L	.	.	.	H	V	R	A	F	L	G	L
Query Conservation			.	.	.
Alig confidence			.	.	.
Template Conservation
Template Sequence		L	L	A	T	M	I	E	T	T	L	A	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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