Job Description P33221 Confidence 99.97% Date Wed Jan 25 15:20:50 GMT 2012 Rank 51 Aligned Residues 281 % Identity 16% Template c3k3pA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans Resolution 2.23 Å

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		13	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.							60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																													.	.										.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																													.	.										.	.	.	.	.	.
Query Sequence		T	R	V	M	L	L	G	S	G	E	.	.	.	.	.	.	.	.	.	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	.	.	H	V	A	H	R	S	H	V	I	.	.	.	.	.	.	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K
Query Conservation												.	.	.	.	.	.	.	.	.																													.	.										.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																													.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	L	V	L	L	Y	G	G	R	S	A	E	R	D	V	S	V	L	S	A	E	S	V	M	R	A	I	N	Y	D	N	F	L	V	K	T	Y	F	I	T	Q	A	G	D	F	I	K	T	Q	E	F	D	S	Q	P	S	D	K	L	M	T	N	D	T	I	I	A	S	Q	K	I	K	P	S	D	I	Y	E	E
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S									S	S									T	T	S			G	G	G				G	G	G	G			T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		76	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure											.	.	.																		.
Query SS confidence											.	.	.																		.
Query Sequence		P	H	Y	I	V	P	E	I	E	.	.	.	A	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P
Query Conservation											.	.	.																		.
Alig confidence											.	.	.																		.																																															.	.
Template Conservation																																																																														.	.
Template Sequence		E	A	V	V	F	P	V	L	H	G	P	M	G	E	D	G	S	I	Q	G	F	L	E	V	L	K	M	P	Y	V	G	T	N	I	L	S	S	S	V	A	M	D	K	I	T	T	N	Q	V	L	E	S	A	T	T	I	P	Q	V	A	Y	V	A	L	I	E	G	E	P	L	E	S	K	L	A	E	.	.	V	E
Template Known Secondary structure		T									S	T	T	T	S	S	S									T	T			B	S	S																											B								T	T	S									.	.
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	E	D	G	D	Y	R
Query Conservation
Alig confidence																																					.	.	.	.												.																			.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.												.																			.	.	.	.	.	.	.	.
Template Sequence		E	K	L	I	Y	P	V	F	V	K	P	A	N	I	S	K	A	E	N	R	T	D	L	K	Q	A	I	A	L	A	L	K	Y	D	S	.	.	.	.	R	V	L	I	E	Q	G	V	D	A	R	.	E	I	E	V	G	I	L	G	N	T	D	V	K	T	T	L	P	G	.	.	.	.	.	.	.	.	E	I	V
Template Known Secondary structure						S	S												S	S																S	.	.	.	.										S		.									S	S	S								.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.												.																			.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.									.	.	230
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.
Predicted Secondary structure																																													.								.	.																						.	.	.
Query SS confidence																																													.								.	.																						.	.	.
Query Sequence		E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	.	V	I	F	S	E	V	S	.	.	P	R	P	H	D	T	G	M	V	T	L	I	S	Q	D	L	S	E	F	A	L	.	.	.	H	V	R
Query Conservation																																													.								.	.																						.	.	.
Alig confidence																																													.								.	.																						.	.	.
Template Conservation
Template Sequence		T	M	A	I	P	A	E	I	D	P	V	I	V	E	K	M	R	D	Y	A	A	T	A	F	R	T	L	G	C	C	G	L	S	R	C	D	F	F	L	T	E	D	G	K	V	Y	L	N	E	L	N	T	M	P	G	F	T	S	M	Y	P	L	L	W	E	N	M	G	L	S	Y	S	V	L	I	E	E	L	V	S
Template Known Secondary structure					S	S																						T	T													T	T										S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		306	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		336	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions