Phyre 2 alignment of P33221 with c3e5nA

Job Description P33221
Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012

Rank 46 Aligned Residues 282

% Identity 22% Template c3e5nA_

PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	13	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Query Sequence	T	R	V	M	L	L	G	S	G	E	.	.	.	.	.	.	.	.	.	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	.	.	.	.	.	.	.	.	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K
Query Conservation											.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	R	V	G	L	I	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	R	N	I	L	D	A	L	D	P	Q	R	F	E	P	V	L	I	G	I	D	K	Q	G	Q	W	H	V	N	D	P	D	S	F	L	L	H	A	D	D	P	A	R	I	A	L	H	R	S	G	R	G	V	A	L	L	P	G	A	Q
Template Known Secondary structure										S	S	T	T															S		T	T	T										T	T	S							G	G	G	S			S	T	T		T	T	T														T	T		S
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	76	.	.	.	80	.	.	.	.	.																	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence	P	H	Y	I	V	P	E	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																			.
Template Conservation																																																														.
Template Sequence	Q	Q	Q	L	R	P	I	Q	Q	A	L	A	Q	I	D	V	V	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	L	L	R	M	A	N	L	P	F	V	G	S	G	V	L	G	S	A	V	A	M	D	K	D	M	A	K	R	.	V	L	R	D	A	R	L	A	V	A	P	F	V	C	F	D	R	H
Template Known Secondary structure	S	S													S								S					S	S									T	T			B	S	S											B							.					T	T			B
Template Predicted Secondary structure																																																														.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

	139	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence	S	L	.	.	.	.	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.																																															.	.	.	.											.
Template Conservation																																																					.	.	.	.											.
Template Sequence	T	A	A	H	A	D	V	D	T	L	I	A	Q	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	Q	V	R	T	A	D	A	F	A	A	A	L	A	L	A	L	A	Y	D	H	.	.	.	.	K	V	L	V	E	A	A	V	A	G	.	R	E	I	E	C	A	V	L	G	N	A	V	P
Template Known Secondary structure			T	T												S	S						S	B	S		S	S	T	T						S	G	G	G									T	T	T		S	.	.	.	.										S	.										S	S	S
Template Predicted Secondary structure																																																					.	.	.	.											.
Template SS confidence
	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.

	215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.					.	.
Predicted Secondary structure																																																													.														.	.	.	.
Query SS confidence																																																													.														.	.	.	.
Query Sequence	V	H	F	C	A	P	V	G	H	R	Q	E	D	G	D	Y	R	E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	.	V	I	F	S	E	V	S	P	R	P	H	D	T	.	.	.	.	G	M
Query Conservation																																																													.														.	.	.	.
Alig confidence								.	.	.	.	.	.	.																																															.														.	.	.	.
Template Conservation								.	.	.	.	.	.	.
Template Sequence	H	A	S	V	C	G	E	.	.	.	.	.	.	.	V	V	V	E	I	V	I	P	A	D	I	D	A	Q	T	Q	Q	R	I	Q	Q	I	A	V	Q	A	Y	Q	A	L	G	C	A	G	M	A	R	V	D	V	F	L	C	A	D	G	R	I	V	I	N	E	V	N	T	L	P	G	F	T	R	I	S	V	Y	P
Template Known Secondary structure								.	.	.	.	.	.	.							S	S		S	S																				T			S										T	T										S	S				S	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.
Template SS confidence
	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	T	L	I	S	Q	D	L	S	E	F	A	L	H	V	R	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	L	W	Q	A	S	G	L	D	Y	R	G	L	I	T	R	L	I
Template Known Secondary structure					T	T	T
Template Predicted Secondary structure
Template SS confidence
	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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