Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 14 Aligned Residues 374 % Identity 17% Template c2yyaB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of gar synthetase from aquifex aeolicus Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90
Predicted Secondary structure																						.	.																																																									.
Query SS confidence																						.	.																																																									.
Query Sequence		R	V	M	L	L	G	S	G	E	L	G	K	E	V	A	I	E	C	Q	R	.	.	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E	I	E	A	I	A	T	D	.	M
Query Conservation																						.	.																																																									.
Alig confidence																						.	.										.	.	.																																													.
Template Conservation																																	.	.	.
Template Sequence		K	V	L	V	V	G	N	G	G	R	E	H	A	I	A	W	K	V	A	Q	S	P	L	V	K	E	L	Y	V	A	K	.	.	.	G	N	A	G	I	W	E	I	A	K	R	V	D	I	S	P	T	D	V	E	K	L	A	E	F	A	K	N	E	G	V	D	F	T	I	V	G	P	E	A	P	L	V	E	G	I
Template Known Secondary structure									S											T	T	S	T	T		S						S	.	.	.			T	T	G	G	G	T	S					S		T	T													T		S						S	S					T	T
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R
Query Conservation													.
Alig confidence													.																			.
Template Conservation																																.
Template Sequence		V	D	E	F	E	K	R	G	L	K	I	F	G	P	N	K	E	A	A	K	L	E	G	S	K	A	F	A	K	T	.	F	M	K	K	Y	G	I	P	T	A	R	Y	E	V	F	T	D	F	E	K	A	K	E	Y	V	E	K	V	G	A	P	I	V	V	K	A	D	G	L	A	A	G	K	G	A	V	V	C	E
Template Known Secondary structure								T	T					S			T	T	T	T												.						T			B							S										T	T	T		S	S						S	S		S	T	T
Template Predicted Secondary structure																																.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																				.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	.	.	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	E	D	G	D	Y	R	E	S	W	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.															.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		T	V	E	K	A	I	E	T	L	D	R	F	L	N	K	K	I	F	G	K	S	S	E	R	V	V	I	E	E	F	L	E	G	E	.	E	A	S	Y	I	V	M	I	N	G	D	R	Y	V	P	L	P	T	S	Q	D	H	K	R	L	L	D	E	D	K	G	P	N	T	G	G	M	G	A	Y	S	P	T	P	V
Template Known Secondary structure		S													T	S			S	T	T	T	S	S	S											.										T	T								B								T	T	T						S		S					S		T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																											.	.																															.
Query SS confidence																											.	.																															.
Query Sequence		Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	.	.	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	.	V	T	L	I	S	Q	D	L	S	E	F	A	L	H	V	R	A	F	L	G	L	P
Query Conservation																											.	.																															.
Alig confidence																											.	.																															.
Template Conservation
Template Sequence		I	N	E	E	V	E	K	R	I	R	E	E	I	V	E	R	V	I	K	G	L	K	E	E	G	I	Y	Y	R	G	F	L	Y	A	G	L	M	I	T	K	E	G	P	K	V	L	E	F	N	V	R	L	G	D	P	E	A	Q	P	I	L	M	R	V	K	N	D	F	L	E	T	L	L	N	F	Y	E	G	K	D
Template Known Secondary structure		S												T											T	T															T	T									S	S			T	T	T							T	B		S												T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.							.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																		.	.	.	.																											.	.	.	.	.	.
Query SS confidence																		.	.	.	.																											.	.	.	.	.	.
Query Sequence		V	G	G	I	R	Q	Y	G	P	A	A	S	A	V	I	L	.	.	.	.	P	Q	L	T	S	Q	N	V	T	F	D	N	V	Q	N	A	V	G	A	D	L	Q	I	R	L	F	.	.	.	.	.	.	G	K	P	E	I	D	G	S	R	R	L	G	V	A	L	A	T	A	E	S	V	V	D	A	I	E	R	A
Query Conservation																		.	.	.	.																											.	.	.	.	.	.
Alig confidence																		.	.	.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		V	H	I	K	E	D	E	R	Y	A	L	D	V	V	L	A	S	R	G	Y	P	E	K	P	E	T	G	K	I	I	H	G	L	D	Y	L	K	S	M	E	D	V	V	V	F	H	A	G	T	K	K	E	G	N	F	T	V	T	S	G	G	R	V	L	N	V	C	A	Y	G	K	T	L	K	E	A	K	E	R	A
Template Known Secondary structure						B		S	S										T	T	T	T	T	S						B		B		T	T	T	G	G	G	S	T	T						S	S					T	T						S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	A	A	G	Q	V	K	V	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	E	A	I	R	Y	V	C	F	E	G
Template Known Secondary structure						T	T		B		T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions