Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 19 Aligned Residues 374 % Identity 17% Template c2xd4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase Resolution 2.65 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90
Predicted Secondary structure																						.	.																																																									.
Query SS confidence																						.	.																																																									.
Query Sequence		R	V	M	L	L	G	S	G	E	L	G	K	E	V	A	I	E	C	Q	R	.	.	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E	I	E	A	I	A	T	D	.	M
Query Conservation																						.	.																																																									.
Alig confidence																						.	.												.	.	.																																											.
Template Conservation																																			.	.	.
Template Sequence		N	V	L	I	I	G	K	G	G	R	E	H	T	L	A	W	K	A	A	Q	S	S	L	V	E	N	V	F	A	A	P	G	N	.	.	.	D	G	M	A	A	S	A	Q	L	V	N	I	E	E	S	D	H	A	G	L	V	S	F	A	K	Q	N	Q	V	G	L	T	I	V	G	P	E	V	P	L	I	E	G	L
Template Known Secondary structure								S	S												T		T	T		S									.	.	.	G	G	G	T	T	T								T	T												T	T								S						T	T
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R
Query Conservation													.
Alig confidence													.																			.
Template Conservation																																.
Template Sequence		V	D	E	F	E	K	A	G	L	H	V	F	G	P	S	K	A	A	A	I	I	E	G	S	K	Q	F	A	K	D	.	L	M	K	K	Y	D	I	P	T	A	E	Y	E	T	F	T	S	F	D	E	A	K	A	Y	V	Q	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	T	V	A	M
Template Known Secondary structure								T	T					S			T	T	T	T												.					T	T			B							S														S	S						S	S		G	G	G							S
Template Predicted Secondary structure																																.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																					.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	.	.	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	E	D	G	D	Y	R	E	S	W	Q	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.														.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		T	E	E	E	A	I	A	C	L	H	D	F	L	E	D	E	K	F	G	D	A	S	A	S	V	V	I	E	E	Y	L	S	G	E	.	E	F	S	L	M	A	F	V	K	G	E	K	V	Y	P	M	V	I	A	Q	D	H	K	R	A	F	D	G	D	K	G	P	N	T	G	G	M	G	A	Y	S	P	V	P	Q
Template Known Secondary structure		S												T	T	S		T	T	T	T	T	T	S	S									S		.										T	T								B								T	T	T						S		S					S		T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
			236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure		.																										.	.																																		.
Query SS confidence		.																										.	.																																		.
Query Sequence		.	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	.	.	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	V	T	L	I	.	S	Q	D	L	S	E	F	A	L	H	V	R	A	F	L	G	L	P
Query Conservation		.																										.	.																																		.
Alig confidence		.																										.	.																																		.
Template Conservation
Template Sequence		I	S	E	E	T	V	R	H	A	V	E	T	I	V	K	P	A	A	K	A	M	V	Q	E	G	R	S	F	T	G	V	L	Y	A	G	L	M	L	T	E	N	G	S	K	V	I	E	F	N	A	R	F	G	D	P	E	T	Q	V	V	L	P	R	M	E	S	D	L	V	Q	V	L	L	D	L	L	D	D	K	E
Template Known Secondary structure		S												T										T	T	T															T	T									S	S			T	T						G	G	G	B		S											T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.								.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																					.																								.	.	.	.	.	.	.
Query SS confidence																					.																								.	.	.	.	.	.	.
Query Sequence		V	G	G	I	R	Q	Y	G	P	A	A	S	A	V	I	L	P	Q	L	.	T	S	Q	N	V	T	F	D	N	V	Q	N	A	V	G	A	D	L	Q	I	R	L	F	.	.	.	.	.	.	.	G	K	P	E	I	D	G	S	R	R	L	G	V	A	L	A	T	A	E	S	V	V	D	A	I	E	R	A	K	H
Query Conservation																					.																								.	.	.	.	.	.	.
Alig confidence																					.																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	L	R	W	K	D	T	A	A	V	S	V	V	L	A	S	E	G	Y	P	E	S	Y	A	K	G	T	P	I	G	S	L	A	A	E	T	E	Q	V	V	V	F	H	A	G	T	K	A	E	G	G	E	F	V	T	N	G	G	R	V	A	N	V	T	A	F	D	E	T	F	E	A	A	R	D	R	V	Y	K
Template Known Secondary structure						B		S											T	T	T	T	S	S													S	S	S	S						S	S					S	S	S					S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	Q	V	K	V	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	D	E	I	F	K	P	G
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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