Phyre 2 alignment of P33221 with c2pvpB

Job Description P33221
Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012

Rank 48 Aligned Residues 274

% Identity 18% Template c2pvpB_

PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	14	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.
Query Sequence	R	V	M	L	L	G	S	G	E	.	.	.	.	.	.	.	.	.	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence	E	F	C	V	L	F	G	G	A	S	F	E	H	E	I	S	I	V	S	A	I	A	L	K	G	V	L	K	D	R	I	K	Y	F	I	F	L	D	E	N	H	H	.	.	.	.	.	.	.	.	F	Y	L	I	E	E	S	N	M	H	S	K	Y	F	A	Q	I	K	E	K	K	L	P	P	L	I	L	T	H	N
Template Known Secondary structure									S	S	T	T																G	G	G									T	T			.	.	.	.	.	.	.	.						G	G	G		S						T	G	G	G	G					B				T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.

														75	.	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.													.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.													.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	H	Y	I	V	P	E	I	E	A	I	A	T	D	.	.	.	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.													.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.													.																			.
Template Conservation																																																															.
Template Sequence	G	L	L	K	N	S	F	L	G	A	K	I	I	E	L	P	L	V	I	N	L	V	H	G	G	D	G	E	D	G	K	L	A	S	L	L	E	F	Y	R	I	A	F	I	G	P	R	I	E	A	S	V	L	S	Y	N	K	Y	L	T	K	L	.	Y	A	K	D	L	G	I	K	T	L	D	Y	V	L	L	N	E
Template Known Secondary structure							T	T									S							S					S	S									T	T					S											S							.					T	T		B									T
Template Predicted Secondary structure																																																															.
Template SS confidence
	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

	138	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence	E	S	L	F	R	E	A	.	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H
Query Conservation								.
Alig confidence								.																																											.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence	K	N	R	A	N	A	L	D	L	M	N	F	N	F	P	F	I	V	K	P	S	N	A	G	S	S	L	G	V	N	V	V	K	E	E	K	E	L	I	Y	A	L	D	S	A	F	E	Y	S	K	.	.	.	.	E	V	L	I	E	P	F	I	Q	G	V	K	E	Y	N	L	A	G	C	K	I	K	K	D	F	C
Template Known Secondary structure	T	T						T	T					S							S	S		S	T	T	T	T						S	T												T	T		S	.	.	.	.									T	T												T	T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	C	A	P	V	G	H	R	Q	E	D	G	D	Y	R	E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	V	T	L	I	S	Q	D
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.
Template Sequence	F	S	Y	I	.	.	.	.	.	.	.	.	E	E	P	N	K	Q	P	K	A	S	L	S	N	A	L	E	E	Q	L	K	E	N	F	K	K	L	Y	S	D	L	F	D	G	A	I	I	R	C	D	F	F	V	I	E	N	E	V	Y	L	N	E	I	N	P	I	P	G	S	L	A	N	Y	L	F	D	D	F	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	B		T	T																								T	T	T	T	T	T											T	T									S	S		G	G	G	G	G	G	G	S	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.
Template SS confidence
	229	230	.	.									.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	297	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	S	E	F	A	L	H	V	R	A	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	T	L	E	N	L	A	Q	S	L	P	K
Template Known Secondary structure										S
Template Predicted Secondary structure
Template SS confidence
	318	.	320	.	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions