Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 34 Aligned Residues 276 % Identity 16% Template c2pn1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:carbamoylphosphate synthase large subunit; PDBTitle: crystal structure of carbamoylphosphate synthase large subunit (split2 gene in mj) (zp_00538348.1) from exiguobacterium sp. 255-15 at 2.00 a3 resolution Resolution 2.00 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																									.	.																														.	.	.	.
Query SS confidence																									.	.																														.	.	.	.
Query Sequence		T	R	V	M	L	L	G	S	G	E	L	G	K	E	V	A	I	E	C	Q	R	L	G	.	.	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	.	.	.	.	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E	I	E	A	I
Query Conservation																									.	.																														.	.	.	.
Alig confidence														.											.	.																														.	.	.	.
Template Conservation														.
Template Sequence		P	H	L	L	I	T	S	A	G	R	R	A	.	K	L	V	E	Y	F	V	K	E	F	K	T	G	R	V	S	T	A	D	C	S	P	L	A	S	A	L	Y	X	A	D	Q	H	Y	I	V	P	K	I	D	E	V	E	Y	I	D	H	L	L	T	L	C	Q	D	E	G	V	T	A	L	L	T	L	I	D	P	E
Template Known Secondary structure								S		T	T			.												S	S							S		T	T		G	G	G	G	G	S	S	S							T	T	S	T	T													T							S	S
Template Predicted Secondary structure														.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		87	.	.	90	.				.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure							.	.	.											.
Query SS confidence							.	.	.											.
Query Sequence		A	T	D	M	L	.	.	.	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G
Query Conservation							.	.	.											.
Alig confidence							.	.	.											.																			.																																								.	.	.
Template Conservation																																							.																																								.	.	.
Template Sequence		L	G	L	L	A	Q	A	T	E	R	F	Q	A	I	G	V	T	V	I	V	S	P	Y	A	A	C	E	L	C	F	D	K	Y	T	X	Y	E	.	Y	C	L	R	Q	G	I	A	H	A	R	T	Y	A	T	X	A	S	F	E	E	A	L	A	A	G	E	V	Q	L	P	V	F	V	K	P	R	N	G	.	.	.
Template Known Secondary structure								T						T	T	T																B							.						T								S	S										T	T	S	S		S							S	B		.	.	.
Template Predicted Secondary structure																																							.																																								.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	E	D	G	D	Y	R	E	S	W	Q	P	Q	Q	M	S	P	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																																								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																																								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	I	V	Q	E	L	L	V	G	Q	.	E	L	G	V	D	A	Y	V	D	L	I	S	G	K	V	T	S	I	F	I	K	E	K	L	T	X	R	A	G	E	T	D	K	S	R	S	V	L	R	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S		.										T	T	T																T	T											.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																																								.
Template SS confidence
																														182	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	V	T	L	I	S	Q	D	L	S	E	F	A	L	H	V	R	A	F	L	G	L	P	V	G	G	I	R	Q	Y	G	P	A	A
Query Conservation
Alig confidence		.	.																																																	.
Template Conservation		.	.																																																	.
Template Sequence		.	.	D	D	V	F	E	L	V	E	H	V	L	D	G	S	G	L	V	G	P	L	D	F	D	L	F	D	V	A	G	T	L	Y	L	S	E	I	N	P	R	F	G	G	G	Y	P	H	A	Y	.	E	C	G	V	N	F	P	A	Q	L	Y	R	N	L	X	H	E	I	N	V	P	Q	I	G	Q	Y	L	D	D
Template Known Secondary structure		.	.												T	T	T														T	T									S	S			T	T						.		T	T												T	T							T	T		S		S	S
Template Predicted Secondary structure		.	.																																																	.
Template SS confidence
				232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		323	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Y	X	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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