Job Description P33221 Confidence 99.11% Date Wed Jan 25 15:20:50 GMT 2012 Rank 79 Aligned Residues 226 % Identity 15% Template c2pbzC_ PDB info PDB header:ligase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of an imp biosynthesis protein purp from2 thermococcus kodakaraensis Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.												.	.	.	.	.
Query SS confidence																																					.	.	.												.	.	.	.	.
Query Sequence		V	M	L	L	G	S	G	E	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	.	.	.	M	H	V	A	H	R	S	H	V	I	N	.	.	.	.	.	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E	I	E	A	I
Query Conservation																																					.	.	.												.	.	.	.	.
Alig confidence										.																											.	.	.												.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	T	I	A	S	H	S	.	S	L	Q	I	L	L	G	A	K	K	E	G	F	K	T	R	L	Y	V	S	P	K	R	R	P	F	Y	S	S	L	P	I	V	D	D	L	V	V	A	E	E	X	T	S	I	L	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	I	V	V	P	H	G	S	F
Template Known Secondary structure						S	S	T	T	.											T	T									T	T	T						T		T	T		S						S		S			T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B				B	T	T
Template Predicted Secondary structure										.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60														.	.	.	.	.	.	.	.	.	70
		87	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		A	T	D	M	.	L	I	Q	L	E	E	E	G	L	N	V	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q
Query Conservation						.
Alig confidence						.																														.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	Y	L	G	I	E	A	I	E	K	A	K	A	R	F	F	G	N	R	R	F	L	K	W	E	T	T	F	E	L	Q	D	K	.	A	L	E	G	A	G	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	E	V	V	E	P	E	D	A	K	P	D	E	L	Y
Template Known Secondary structure					S							T			S			B	S		S	S	G	G	G	G	G	S								.					T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B			B			S					S	S
Template Predicted Secondary structure																																				.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.																						.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.													.	.	230	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	E	D	.	.	.	.	.	.	.	.	.	.	.	.	G	D	Y	R	E	S
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	R	I	E	G	S	E	L	.	.	.	.	.	.	.	.	.	.	.	E	E	R	L	S	P	Y	R	V	E	R	F	I	P	G	V	Y	L	Y	V	H	F	F	Y	S	P	I	L	E	R	L	E	L	L	G	V	D	E	R	V	L	I	A	D	G	N	A	R	W	P	V	K	P	L	P	Y	T	I	V	G
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	S														S											T	T	T	T													T	T		S	S	S	S	S			S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.												.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	.	.	.	.	.	.	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G
Query Conservation																											.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																.
Template Conservation																																																.
Template Sequence		N	R	A	I	A	L	R	E	S	L	L	P	Q	L	Y	D	Y	G	L	A	F	V	R	T	X	R	E	L	E	P	P	G	V	I	G	P	F	A	L	H	F	A	Y	D	G	S	.	F	K	A	I	G	I	A	S	R	I	D	G	G	S
Template Known Secondary structure									G	G	G																			S	T	T				S									S	S	S	.								S	S	B		S	G	G
Template Predicted Secondary structure																																																.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions