Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 26 Aligned Residues 372 % Identity 20% Template c2ip4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8 Resolution 2.80 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																																																									.
Query SS confidence																							.	.																																																									.
Query Sequence		T	R	V	M	L	L	G	S	G	E	L	G	K	E	V	A	I	E	C	Q	R	.	.	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E	I	E	A	I	A	T	D	.
Query Conservation																							.	.																																																									.
Alig confidence																							.	.													.	.	.								.																																		.
Template Conservation																																					.	.	.								.
Template Sequence		X	K	V	L	V	V	G	S	G	G	R	E	H	A	L	L	W	K	A	A	Q	S	P	R	V	K	R	L	Y	A	A	P	G	N	A	.	.	.	G	X	E	A	L	A	E	.	L	V	P	W	N	G	D	V	E	A	L	A	D	W	A	L	A	E	G	I	D	L	T	L	V	G	P	E	A	P	L	V	E	G
Template Known Secondary structure									S	S												T		S	S											T	.	.	.	T	G	G	G	T	S		.						S													T								S	S					T	T
Template Predicted Secondary structure																																					.	.	.								.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I
Query Conservation														.
Alig confidence														.																			.
Template Conservation																																	.
Template Sequence		I	A	D	A	F	Q	A	R	G	L	L	L	F	G	P	T	Q	K	A	A	X	I	E	G	S	K	A	F	A	K	G	.	L	X	E	R	Y	G	I	P	T	A	R	Y	R	V	F	R	E	P	L	E	A	L	A	Y	L	E	E	V	G	V	P	V	V	V	K	D	S	G	L	A	A	G	K	G	V	T	V	A
Template Known Secondary structure										T					S																		.					T				B							S	S													S	S						T	T	S		S	S	T	T
Template Predicted Secondary structure																																	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.									.	.	230	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.												.
Query SS confidence																																																													.	.	.	.	.	.	.	.												.
Query Sequence		R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	E	D	.	.	.	.	.	.	.	.	G	D	Y	R	E	S	W	Q	P	Q	Q	.	M
Query Conservation																																																													.	.	.	.	.	.	.	.												.
Alig confidence																						.	.												.																										.	.	.	.	.	.	.	.												.
Template Conservation																						.	.												.
Template Sequence		F	D	L	H	Q	A	K	Q	A	V	A	N	I	L	N	R	A	E	G	G	.	.	E	V	V	V	E	E	Y	L	E	G	E	.	E	A	T	V	L	A	L	T	D	G	E	T	I	L	P	L	L	P	S	Q	D	H	K	R	L	L	D	G	D	Q	G	P	X	T	G	G	X	G	A	V	A	P	Y	P	X	D
Template Known Secondary structure		S													T	T	S	S	S			.	.										S		.									S	S	S								B								T	T	T						S		S					S
Template Predicted Secondary structure																						.	.												.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																				.	.	.	.	.																																	.
Query SS confidence																				.	.	.	.	.																																	.
Query Sequence		S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	.	.	.	.	.	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	.	V	T	L	I	S	Q	D	L	S	E	F	A	L	H	V	R	A	F	L	G	L	P	V	G
Query Conservation																				.	.	.	.	.																																	.
Alig confidence																				.	.	.	.	.																																	.
Template Conservation
Template Sequence		E	A	T	L	R	R	V	E	E	E	I	L	G	P	L	V	R	G	L	R	A	E	G	V	V	Y	R	G	V	V	Y	A	G	L	X	L	T	R	E	G	P	K	V	L	E	F	N	A	R	F	G	D	P	E	A	Q	A	L	L	P	L	L	E	N	D	L	V	E	L	A	L	R	V	A	E	G	R	L	A	G
Template Known Secondary structure												T											T	T															S	S									S	S			T	T						T	T	T	B		S												T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.										.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.
Query Sequence		G	I	R	Q	Y	G	P	A	A	S	A	V	I	L	P	Q	L	T	S	Q	N	V	T	F	D	N	V	Q	N	A	V	G	A	D	L	.	.	.	.	.	.	.	.	.	Q	I	R	L	F	G	K	P	E	I	D	G	S	R	R	L	G	V	A	L	A	T	A	E	S	V	V	D	A	I	E	R	A	K	H	A
Query Conservation																																					.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	L	S	W	K	E	G	A	A	A	C	V	V	L	A	A	P	G	Y	P	E	S	P	R	K	G	I	P	L	H	V	P	E	P	P	E	G	V	L	V	F	H	A	G	T	R	R	E	G	G	R	L	V	S	A	G	G	R	V	L	N	V	V	G	L	G	R	D	L	K	E	A	L	E	R	A	Y	A	Y
Template Known Secondary structure						B		S	S										T	T	T	T	T	S						B		B						T	T						S	S				S	S	S	S					S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		385	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	Q	V	K	V	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	Q	V	G	F	P	G
Template Known Secondary structure		G	G	G	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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