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Job DescriptionP33221
Confidence100.00%DateWed Jan 25 15:20:50 GMT 2012
Rank32Aligned Residues288
% Identity17%Templatec2i80B_
PDB info PDB header:ligaseChain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies
Resolution2.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20... ......30.........40.........50.........60... ......70.
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Query Sequence  TRVMLLGSGEL. . . . . . . . . GKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLD. . . . . . . . . . . . GDALRRVV
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Template Sequence  ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALEISQLLKESS
Template Known Secondary structure 
SSTTS
TTT
TTS




S



GGGGS
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T
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   72.......80..... ....90.........100. ........110.........120.........130...... ...140
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Query Sequence  ELEKPHYIVPEIEA. . . IATDMLIQLEEEGLNV. VPCARATKLTMNREGIRRLAAEELQLPTSTYRFAD. . . . . . . SESL
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Template Sequence  SGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQ. LFEHRGLPQLPYISFLRSEYEKYEHNI
Template Known Secondary structure  TSS

S
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BTTTBSST

BSS


.T




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   84.....90.........100.........110.........120.........130..... ....140.........150.........160..
 
   141........150.........160.........170.........180.........190.........200.........210.........220
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Query Sequence  FREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAP
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Template Sequence  LKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDR. . . . KLVIEQGVNA. REIEVAVLGN. . DYPEATW
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SSTT
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TT
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   163......170.........180.........190.........200........ .210........ .220........ .230.....
 
   221........230.........240.........250.........260.........270.... .....280........ .290.....
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Query Sequence  VGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGDE. VIFSEVSPRPHDTG. . . . MVTLISQ
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Template Sequence  PGEVVKDVAFVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINETNAMPGFTAFSMYPKLWENM
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TT

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STTST
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   236...240.........250.........260.........270.........280.........290.........300.........310.....
 
   296...300.. ......
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Query Sequence  DLSEFAL. . . HVRAFL
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Template Sequence  GLSYPELITKLIELAK
Template Known Secondary structure  T

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   327..330.........340..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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