Job Description P33221 Confidence 100.00% Date Wed Jan 25 15:20:50 GMT 2012 Rank 12 Aligned Residues 375 % Identity 19% Template c2dzdB_ PDB info PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.									60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																															.	.																			.	.	.	.	.	.	.	.
Query SS confidence																															.	.																			.	.	.	.	.	.	.	.
Query Sequence		T	R	V	M	L	L	G	S	G	E	L	G	K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	.	.	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	.	.	.	.	.	.	.	.	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	E
Query Conservation																															.	.																			.	.	.	.	.	.	.	.
Alig confidence																															.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	K	V	L	V	A	N	R	G	E	I	A	I	R	V	F	R	A	C	T	E	L	G	I	R	T	V	A	I	Y	S	K	E	D	V	G	S	Y	H	R	Y	K	A	D	E	A	Y	L	V	G	E	G	K	K	P	I	E	A	Y	L	D	I	E	G	I	I	E	I	A	K	A	H	D	V	D	A	I	H	P	G
Template Known Secondary structure		S																					T	T									G	G	G	G	G		G	G	G	G	G	S	S						S	T	T	S						T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		83	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure					.	.																	.																															.	.
Query SS confidence					.	.																	.																															.	.
Query Sequence		I	E	A	.	.	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	.	V	P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	.	.	Y	R	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V
Query Conservation					.	.																	.																															.	.
Alig confidence					.	.																	.																			.												.	.
Template Conservation																																										.
Template Sequence		Y	G	F	L	S	E	N	I	Q	F	A	K	R	C	R	E	E	G	I	I	F	I	G	P	N	E	N	H	L	D	M	F	G	D	K	V	K	A	R	H	.	A	A	V	N	A	G	I	P	V	I	P	G	S	D	G	P	V	D	G	L	E	D	V	V	A	F	A	E	A	H	G	Y	P	I	I	I	K	A	A
Template Known Secondary structure		S	S	S	S	T	T											T	T				S	S										T	S							.				T	T	T			B			B		S	S			S	S													S							T
Template Predicted Secondary structure																																										.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q	Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	.	.	Q	E	D	G	D	Y	R	E	S	W	Q
Query Conservation																																																																					.	.
Alig confidence																															.	.	.	.																																			.	.
Template Conservation																															.	.	.	.
Template Sequence		L	G	G	G	G	R	G	M	R	I	V	R	S	K	S	E	V	K	E	A	F	E	R	A	K	S	E	A	K	.	.	.	.	E	V	Y	V	E	K	L	I	E	N	P	K	H	I	E	V	Q	I	L	G	D	Y	E	G	N	I	V	H	L	Y	E	R	D	C	S	V	Q	R	R	H	Q	K	V	V	E	V	A
Template Known Secondary structure		T	T		S	S	T	T						S																	.	.	.	.										S												T	T	S															T	T
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		236	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		P	Q	.	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G	L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	V	T	L	I	S	Q	D	L	S	E	F	A	L	H	V	R	A	F	L	G	L	P	V	G	G
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		P	S	V	S	L	S	D	E	L	R	Q	R	I	C	E	A	A	V	Q	L	M	R	S	V	G	Y	V	N	A	G	T	V	E	F	L	V	S	G	D	E	F	Y	F	I	E	V	N	P	R	I	Q	V	E	H	T	I	T	E	M	I	T	G	I	D	I	V	Q	S	Q	I	L	I	A	D	G	C	S	L	H	S
Template Known Secondary structure		S		T	T																					T													T	T										S			T	T									T												T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		315											.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.						.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																				.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																				.	.	.	.	.
Query Sequence		I	.	.	.	.	.	.	.	.	.	.	R	Q	Y	G	P	A	A	S	A	V	I	L	P	Q	L	T	S	Q	N	.	.	.	.	.	V	T	F	D	N	V	Q	N	A	V	G	A	D	L	Q	I	R	L	F	.	.	.	.	.	G	K	P	E	I	D	G	S	R	R	L	G	V	A	L	A	T	A	E	S	V
Query Conservation			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																				.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																				.	.	.	.	.
Template Conservation
Template Sequence		H	E	V	G	I	P	K	Q	E	D	I	R	I	N	G	Y	A	I	Q	S	R	V	T	T	E	D	P	L	N	N	F	M	P	D	T	G	K	I	M	A	Y	R	S	G	G	G	F	G	V	R	L	D	A	G	N	G	F	Q	G	A	V	I	T	P	Y	Y	D	S	L	L	V	K	L	S	T	W	A	L	T	F
Template Known Secondary structure		T	T	T					T	T	T					S									S			T	T	T	T	T																T	T						S	S		S	T	T					S	S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	I	E	R	A	K	H	A	A	G	Q	V	K	V	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	A	A	R	K	M	L	R	N	L	R	E	F	R	I	R	G
Template Known Secondary structure																			S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions