Job Description P33221 Confidence 99.96% Date Wed Jan 25 15:20:50 GMT 2012 Rank 55 Aligned Residues 234 % Identity 17% Template c1uc8B_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:lysine biosynthesis enzyme; PDBTitle: crystal structure of a lysine biosynthesis enzyme, lysx,2 from thermus thermophilus hb8 Resolution 2.00 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		K	E	V	A	I	E	C	Q	R	L	G	V	E	V	I	A	V	D	R	Y	A	D	A	P	A	M	H	V	A	H	R	S	H	V	I	N	M	L	D	G	D	A	L	R	R	V	V	E	L	E	K	P	H	Y	I	V	P	.	.	E	I	E	A	I	A	T	D	M	L	I	Q	L	E	E	E	G	L	N	V	V
Query Conservation																																																											.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	M	L	F	E	R	A	E	A	L	G	L	P	Y	K	K	V	Y	V	P	A	L	P	M	V	L	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	K	E	L	E	G	V	T	V	A	L	E	R	C	V	S	Q	S	R	G	L	A	A	A	R	Y	L	T	A	L	G	I	P	V	V
Template Known Secondary structure												T								G	G	G				B	T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	T	T									S	S														T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	C	A	R	A	T	K	L	T	M	N	R	E	G	I	R	R	L	A	A	E	E	L	Q	L	P	T	S	T	Y	R	F	A	D	S	E	S	L	F	R	E	A	V	A	D	I	G	Y	P	C	I	V	K	P	V	M	S	S	S	G	K	G	Q	T	F	I	R	S	A	E	Q	L	A	Q	A	W	K	Y	A	Q
Query Conservation
Alig confidence																			.																																																						.	.	.	.	.	.	.	.	.
Template Conservation																			.																																																						.	.	.	.	.	.	.	.	.
Template Sequence		N	R	P	E	V	I	E	A	C	G	D	K	W	A	T	S	V	.	A	L	A	K	A	G	L	P	Q	P	K	T	A	L	A	T	D	R	E	E	A	L	R	L	M	E	A	F	G	Y	P	V	V	L	K	P	V	I	X	X	X	X	X	X	X	X	X	X	X	X	G	F	Q	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S																	.					T	T										S	S													S	S									B		S										T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	G	R	A	G	A	G	R	V	I	V	E	G	V	V	K	F	D	F	E	I	T	L	L	T	V	S	A	V	D	G	V	H	F	C	A	P	V	G	H	R	Q	E	D	G	D	Y	R	E	S	W	Q	P	Q	Q	M	S	P	L	A	L	E	R	A	Q	E	I	A	R	K	V	V	L	A	L	G	G	Y	G
Query Conservation
Alig confidence		.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	H	Q	L	F	Y	I	Q	E	Y	V	E	K	P	.	G	R	D	I	R	V	F	V	V	G	E	R	A	I	A	A	I	Y	R	A	E	N	C	P	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	V	A	R	L	S	V	K	A	A	E	A	V	G	G	.	G
Template Known Secondary structure		.	.	.	.	.	.	T	T											S	.	S									T	T																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T		.	S
Template Predicted Secondary structure		.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
								163	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	V	E	L	F	V	C	G	D	E	V	I	F	S	E	V	S	P	R	P	H	D	T	G	M	V	T	L	I	S	Q	D	L	S	E	F	A	L	H	V	R	A	F	L	G	L
Query Conservation
Alig confidence																												.	.
Template Conservation																												.	.
Template Sequence		V	V	A	V	D	L	F	E	S	E	R	G	L	L	V	N	E	V	N	H	T	M	E	F	K	N	.	.	S	V	H	T	T	G	V	D	I	P	G	E	I	L	K	Y	A	W	S	L
Template Known Secondary structure											T	T									T	T				T	T	.	.																				T
Template Predicted Secondary structure																												.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions