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Job DescriptionP33221
Confidence99.86%DateWed Jan 25 15:20:50 GMT 2012
Rank66Aligned Residues224
% Identity14%Templatec1pk8D_
PDB info PDB header:membrane proteinChain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   75....80. ........90.........100.........110.........120.........130........ .140...
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Query Sequence  KPHYIVP. . . . . . . EIEAIATDMLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSE. . . . SLFRE
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Template Sequence  KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQ. MVRLHKKLGTEEFPLIDQTFYPNHKE
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   179180.........190.........200.........210.........220.........230. ........240.........250.......
 
   144.....150.........160.........170.........180.........190.........200.........210.........220...
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Query Sequence  AVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGH
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Template Sequence  MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKT. . . . YATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSG
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   258.260.........270.........280.........290.........300 .........310.........320.........330...
 
   224.....230.........240.........250.........260.........270.... .....280.........290.........300..
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Query Sequence  RQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGDE. VIFSEVSPRPHDTGMVTLISQDLSEFAL
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Template Sequence  NWKTNTGSAMLEQIAMSDR. . . . YKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVEL
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   334.....340.........350.. .......360.........370.........380.........390.........400.........
 
   303....
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Query Sequence  HVRAF
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Template Sequence  VVNKM
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   410....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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